Gene
| Gene Model ID | pfu_aug2.0_1132.1_08178 |
|---|---|
| Locus | scaffold1132.1 : 25986 ... 40183 : + |
| To GenomeBrowser | scaffold1132.1:25986..40183 |
| Genes list of scaffold | scaffold1132.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1132.1_08178.t1 | 1 | 1 | Fibrinogen_C | 43 | 175 | 5.8e-33 | 114.4 | 5.3e-37 | 7.9e-33 | 114.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1132.1_08178.t1 | gi|557327381|ref|XP_006036651.1| | PREDICTED: tenascin-X [Alligator sinensis] | 2.0e-30 |
| pfu_aug2.0_1132.1_08178.t1 | gi|564260567|ref|XP_006269192.1| | PREDICTED: LOW QUALITY PROTEIN: tenascin-X [Alligator mississippiensis] | 3.0e-30 |
| pfu_aug2.0_1132.1_08178.t1 | gi|584056774|ref|XP_006772933.1| | PREDICTED: LOW QUALITY PROTEIN: tenascin-X, partial [Myotis davidii] | 5.0e-29 |
| pfu_aug2.0_1132.1_08178.t1 | gi|641730740|ref|XP_008155630.1| | PREDICTED: tenascin-X [Eptesicus fuscus] | 8.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_1132.1_08178.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1132.1_08178.t1 atgggttcctatgtaaagtcagcagcctggaaacctctcggttggaaggcaactatggacggcggtatgacactctctgt tcagcagaaatatcaaattccgttgaaaggcactttgcacgggaaaggtaatgatgctttgaatttgctcacaaaagacg gggattgtactcttcgagttgacctagaaaggatcggcggagatcgagcttactccaagttttctaatttcaagatatca tccgaaagtgacggctatagaatgaatgtcacttcctatgcagggacaggaggagacgctatgacatacgtcaatggaat gagatttacaacgtatgatagggacaacgataagtatgacaagagttgtgctcaccatatgtctggtgcatggtggtata acaattgttcatattccaatctcaatggcctatacggaaagaaaggaacaaaatacatgcagtggtacaactggaaacac cagagtaaatacgcctacatgcaaaaaacaaagatgatgttaaaatgctaa |
|
Protein
| Protein ID | pfu_aug2.0_1132.1_08178.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1132.1_08178.t1 MGSYVKSAAWKPLGWKATMDGGMTLSVQQKYQIPLKGTLHGKGNDALNLLTKDGDCTLRVDLERIGGDRAYSKFSNFKIS SESDGYRMNVTSYAGTGGDAMTYVNGMRFTTYDRDNDKYDKSCAHHMSGAWWYNNCSYSNLNGLYGKKGTKYMQWYNWKH QSKYAYMQKTKMMLKC |
|