Gene
| Gene Model ID | pfu_aug2.0_1132.1_08181 |
|---|---|
| Locus | scaffold1132.1 : 142983 ... 144595 : - |
| To GenomeBrowser | scaffold1132.1:142983..144595 |
| Genes list of scaffold | scaffold1132.1 |
| Synonym | pfu_aug1.0_18464.1_32920 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho-related gtp-binding protein isoform x1 | GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1132.1_08181.t1 | 1 | 1 | Miro | 7 | 119 | 3.7e-10 | 40.3 | 3.8e-13 | 6.2e-10 | 39.6 |
| pfu_aug2.0_1132.1_08181.t1 | 1 | 1 | Ras | 8 | 160 | 2.3e-14 | 53.1 | 1.9e-17 | 3.1e-14 | 52.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1132.1_08181.t1 | gi|524893104|ref|XP_005103072.1| | PREDICTED: cell division control protein 42 homolog [Aplysia californica] | 3.0e-12 |
| pfu_aug2.0_1132.1_08181.t1 | gi|290992202|ref|XP_002678723.1| | rho family small GTPase [Naegleria gruberi] | 2.0e-10 |
| pfu_aug2.0_1132.1_08181.t1 | gi|167395495|ref|XP_001741568.1| | GTPase_rho [Entamoeba dispar SAW760] | 4.0e-10 |
| pfu_aug2.0_1132.1_08181.t1 | gi|558191608|ref|XP_006129557.1| | PREDICTED: rho-related GTP-binding protein RhoH [Pelodiscus sinensis] | 7.0e-10 |
| pfu_aug2.0_1132.1_08181.t1 | gi|327258994|ref|XP_003214323.1| | PREDICTED: rho-related GTP-binding protein RhoJ isoform X1 [Anolis carolinensis] | 9.0e-10 |
Transcript
| Transcript ID | pfu_aug2.0_1132.1_08181.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1132.1_08181.t1 atgcacaaaaaagagaaaaggtgcttagttgttggggacgccatggtaggaaaaacgacgttaataaagacattacttgg cataccgacgtcagaacgttacgaatccacagtgttcttggacttctataaaggacgtgtaaaggtacccaggaccaaag aatcggcgattgttacatttactgacttctcagtagagtctgatgtcgtacgtctgcctgtggagaacgatgaccaaatt ataatagtctgctacagtgccacggacagggaatcctacatcaatgcccggacattttggttgccacttatcaaaaagaa ccataaacggaaccctatcctgattgtcgccacaaatacggaatccatcgattccaccgacagtgagcacgttgaaagca aagacggacttagcacagcaaaacttttcaatgttcaatctttctgtgaattttccaagaccaattctccggacatcact ggaattttagacttcattaccatgccattttgttacgaccacgacaaacaaaagatctgtcaaaggtga |
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Protein
| Protein ID | pfu_aug2.0_1132.1_08181.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1132.1_08181.t1 MHKKEKRCLVVGDAMVGKTTLIKTLLGIPTSERYESTVFLDFYKGRVKVPRTKESAIVTFTDFSVESDVVRLPVENDDQI IIVCYSATDRESYINARTFWLPLIKKNHKRNPILIVATNTESIDSTDSEHVESKDGLSTAKLFNVQSFCEFSKTNSPDIT GILDFITMPFCYDHDKQKICQR |
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