Gene
| Gene Model ID | pfu_aug2.0_1134.1_14808 |
|---|---|
| Locus | scaffold1134.1 : 61014 ... 63495 : - |
| To GenomeBrowser | scaffold1134.1:61014..63495 |
| Genes list of scaffold | scaffold1134.1 |
| Synonym | pfu_aug1.0_32586.1_19460 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1134.1_14808.t1 | 4 | 1 | zf-B_box | 52 | 96 | 3.5e-09 | 36.3 | 1.3e-06 | 0.0047 | 16.7 |
| pfu_aug2.0_1134.1_14808.t1 | 4 | 2 | zf-B_box | 104 | 114 | 3.5e-09 | 36.3 | 0.43 | 1600.0 | -1.0 |
| pfu_aug2.0_1134.1_14808.t1 | 4 | 3 | zf-B_box | 160 | 204 | 3.5e-09 | 36.3 | 1.3e-06 | 0.0047 | 16.7 |
| pfu_aug2.0_1134.1_14808.t1 | 4 | 4 | zf-B_box | 218 | 249 | 3.5e-09 | 36.3 | 1.4e-07 | 0.00051 | 19.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1134.1_14808.t1 | gi|585651776|ref|XP_006814799.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Saccoglossus kowalevskii] | 2.0e-07 |
| pfu_aug2.0_1134.1_14808.t1 | gi|260817064|ref|XP_002603407.1| | hypothetical protein BRAFLDRAFT_159967 [Branchiostoma floridae] | 7.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_1134.1_14808.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1134.1_14808.t1 atgtcttcacagcaagagttaaacaatatcgaaagcgatgtcggtgaaaatggcaaaaagaccactgatgatgcctcatg tgacaatgttggtgagcaagatgaagcaaaagctctctcatgttatgaagtacaaaaggccatcaaaagtaaattctcat gtgaactctgtgacacatttgacaaagttaactcacactgcatggagtgcaaccaaaatatctgtgacgcttgttgtagg attcactcccgtacaaagtcggcatctggacatagtgtggtagacatcaaactctgggaaagatttagtaaagacgtaga atgccacaatcatcctcaagagttaaacaatatcgaaagcgatgtcggtgaaaatggcaaaaagaccactgatgatgcct catgtgacaatgttggtgagcaagatgaagcaaaagctctctcatgttatgaagtacaaaaggccatcaaaagtaaattc tcatgtgaactctgtgacacatttgacaaagttaactcacactgcatggagtgcaaccaaaatatctgtgacgcttgttg taggattcactcccgtacaaagtcggcatctggacatagtgtggtagacatcaaactatgggaaagatttagtaaagacg tagaatgtcacaatcatcctgtatgtcccgaacatccaaacaaagtgtatcacttaagtctgtattgctcaaactgtatg gaaatggtgtgcggatactgtcgtaaaaacttgagacgaccgcctgaaccacagatagagggcttgccagagctaacagg agaggagaaaaagcttcaagagctctacctacaactagagtattataaagaagtagagaaaatgatattacttgaccaag ggatcgacacgcgtaaaacaccagagaaacccatgatggcagacaaggtgaaggaatttatgaagaagtttacaaatagg attgataagatacgcaaggagatgatcaccaaggtcaatacacattatgaagaggaaaaacaggtcagtctagagtacac atacagggacaaaatagatgccctggaagagaagatagaagcatacaatcagaaactttttgaccattctaaagctaagt atatgaacgcagcgaaagggtcgggaattgaccttactgctacatacaaagctatagatagagaaagagaaaatgagaag aaagctgctgccgagagagcggagttagataaacatgagagggaggaagtcgtaaatgaagtattacaagatagggcagg agatgggaagggagagaaattaagacggagagttcgttcacccacgtttataccaggagaaatggaggaagatcaaataa aggaaatgatacaggaatacatactcaatggtgagacgccagagcttattgccaaggaagaggctctcatacgggaaatg tttgggaaattggaatacgaaatagtggaagaaagagaagatggagtgacagaggtcacaaagataaaacaccttggtga tgaactaaaatttgaagatatagagaaaagctggacctaa |
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Protein
| Protein ID | pfu_aug2.0_1134.1_14808.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1134.1_14808.t1 MSSQQELNNIESDVGENGKKTTDDASCDNVGEQDEAKALSCYEVQKAIKSKFSCELCDTFDKVNSHCMECNQNICDACCR IHSRTKSASGHSVVDIKLWERFSKDVECHNHPQELNNIESDVGENGKKTTDDASCDNVGEQDEAKALSCYEVQKAIKSKF SCELCDTFDKVNSHCMECNQNICDACCRIHSRTKSASGHSVVDIKLWERFSKDVECHNHPVCPEHPNKVYHLSLYCSNCM EMVCGYCRKNLRRPPEPQIEGLPELTGEEKKLQELYLQLEYYKEVEKMILLDQGIDTRKTPEKPMMADKVKEFMKKFTNR IDKIRKEMITKVNTHYEEEKQVSLEYTYRDKIDALEEKIEAYNQKLFDHSKAKYMNAAKGSGIDLTATYKAIDRERENEK KAAAERAELDKHEREEVVNEVLQDRAGDGKGEKLRRRVRSPTFIPGEMEEDQIKEMIQEYILNGETPELIAKEEALIREM FGKLEYEIVEEREDGVTEVTKIKHLGDELKFEDIEKSWT |
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