Gene
| Gene Model ID | pfu_aug2.0_1137.1_24714 |
|---|---|
| Locus | scaffold1137.1 : 145201 ... 174465 : - |
| To GenomeBrowser | scaffold1137.1:145201..174465 |
| Genes list of scaffold | scaffold1137.1 |
| Synonym | pfu_aug1.0_5522.1_67267 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1137.1_24714.t1 | 8 | 1 | Ldl_recept_a | 428 | 452 | 3.2e-08 | 33.3 | 0.18 | 880.0 | -0.1 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 2 | Ldl_recept_a | 928 | 943 | 3.2e-08 | 33.3 | 0.27 | 1400.0 | -0.7 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 1 | TSP_1 | 974 | 1030 | 0.0 | 204.0 | 7.0e-09 | 3.4e-05 | 23.8 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 2 | TSP_1 | 1038 | 1087 | 0.0 | 204.0 | 3.4e-13 | 1.7e-09 | 37.6 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 3 | TSP_1 | 1095 | 1144 | 0.0 | 204.0 | 2.2e-12 | 1.1e-08 | 35.0 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 3 | Ldl_recept_a | 1138 | 1144 | 3.2e-08 | 33.3 | 3.0 | 15000.0 | -5.5 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 4 | TSP_1 | 1152 | 1201 | 0.0 | 204.0 | 6.7e-12 | 3.3e-08 | 33.5 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 5 | TSP_1 | 1208 | 1258 | 0.0 | 204.0 | 9.1e-14 | 4.5e-10 | 39.4 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 4 | Ldl_recept_a | 1253 | 1259 | 3.2e-08 | 33.3 | 1.4 | 6800.0 | -3.0 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 6 | TSP_1 | 1266 | 1315 | 0.0 | 204.0 | 3.2e-12 | 1.6e-08 | 34.5 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 5 | Ldl_recept_a | 1295 | 1310 | 3.2e-08 | 33.3 | 2.0 | 10000.0 | -3.5 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 6 | Ldl_recept_a | 1327 | 1361 | 3.2e-08 | 33.3 | 3.4e-09 | 1.7e-05 | 24.6 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 7 | Ldl_recept_a | 1488 | 1500 | 3.2e-08 | 33.3 | 0.15 | 720.0 | 0.2 |
| pfu_aug2.0_1137.1_24714.t1 | 7 | 7 | TSP_1 | 1530 | 1581 | 0.0 | 204.0 | 3.6e-13 | 1.8e-09 | 37.5 |
| pfu_aug2.0_1137.1_24714.t1 | 8 | 8 | Ldl_recept_a | 1592 | 1628 | 3.2e-08 | 33.3 | 3.5e-09 | 1.7e-05 | 24.5 |
Transcript
| Transcript ID | pfu_aug2.0_1137.1_24714.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1137.1_24714.t1 atgaattttatttcaggggcgccggacaacagaggaaccgtgttcatcataggattcatgcagaaccattacgagaacaa tgacgtagagttgttcgtcactacatccagaacaacgactgttagtgtaagagttacctcccccagatatagtaacccta aaatcgactcatcattttccataacgtcgggacaggttaaacaagtcttcattagcaaccgactacgtatgtataatact ggtaaagactccaagggattacgtatagagggtagcgatgaagtcgtcgtctatggtgtaaacaaggagacctactcttg cgatgccttcttggccttcccagtagatgtactaggaaccgagtattatgcctgtatgcaccatccaacttcatatgctg gagaaatcatgattgtggctacggaagacagtacctctgtaagcttcagaatgtcctgtaccgtctcttatggtggaagt agctactcaagaggtcaaacgttgaccttagcggtcaatcaatatgactgtgtccagctgcagacctttgaagatttgac tggtacctatatttcatcaaataagaaaatcgcattctacagtggtaacagaagaacaaggattggagctggttcatcct cagatcacatcagtgaacagcttatgccagttgacacatggggtaaaagattcgccactgtgcctattccaactcgtacc actggtgactattttagatttgttgctagcgaagcaggaactgtcgtaactgttagtgggaagagagggtcatccaactt caacgaccagtttactctttcaagtgctggaagttttgctgagaagctttatgcctcaaacttgtactccttagtagaag ctaccaaacccatccaaatcgtccagtttgtgttgagtcagcagtctgagcccgctgatccggctatgatcatgattccg ccaatagaacagtacgccgccgattacgtattctctactccaaaatactcatacgggtcctacactaattacttcgtctt catcgtgtccaacagtcaaaggagcggactgagactaaatggaaatgctttcccctccaccacatacaatgctatccctg gtacagatttggttggaggttacattgtagtagctgaaggaactcataccatcagacatacatcccccatctctgtattc tgtggttacttgtttggacttgccaagtgggaatcttatggtttacctggtggaatgagaatggcccccgtcaacacgat ttgtgtcccaaccacaactcaaactggagacggtattgacaatgactgtgatggtttgattgacgaggaattgtgtcatg ataactggcaaaacacagatgacgacggcgatggaaaacgggatgaagactgtgccaagccaccaccagggagattacta ctgttaatgaccgtggtcatccttgccagccttgaccattatgtaaaaggtgcaccggacaacagaggaacagtgttcat aatcggcttcatgcagaaccactacgagaacaatgacgtagaattattcatcaccacatccaagacaaccactgtgaacg tccgggtgacgtcaccaagatggagcaatccgacgatcgactcgtctttttccatcacatctggtcaggtcagacaggtc ttcatcagtaaccgactgcgcatgtataacaccggtaaagacgccaagggtctgcggatagaggctaacgaagaagtcgt ggtgtatggcgtaaacaaggagacgtattcttgtgatgccttcctcgcctttccactagacgtactcgggaacgaatatt acgcatgcatgcaccatccaacttcatatgctggggaaatcatggttgtaggtacggaggatggtacgtctgtcagcttc agaatgtcctgcactgtcacttacggcggtagcacatactccagtggacaaacgttaaccgtggccatcaatcaatatga ctgtgttcagctacaaacatttgaagacttgactggaacctacatttcagcaaacaaaaatatcgcattctacagtggta acagaagaacgaggattggagctgggtcatcttcagatcacatcagtgagcagcttatgccagttgcaacttggggtaag agattcgccactgtgcctattccaactcgtaccactggagactattttagatttgttgccagcgaagcaggaactgtcgt gactgttagtgggaagagaggatcatccaacttcaacgaccaattcacactttcaagtgctggaagtttcgctgaaaagc tgtatgcctcaaacttgtactctttagtagaagcctccaagccaatccaaattgtccagtttgtgctgagtcagcagtct gagcccgctgatccggccatgatcatgattcctccaatagagcaatacgccgccgactacgtattctctactccaaaata ttcacagggctcctacacaaactacttcgtcttcatcgtgtccaacagccaaaggagtggcttaaggctgaatggtaact cgttcccatctacaacctataacgccatacctggaacagatttggtgggaggttacatcgtagtagctgaaggaactcat accatcagacatacatctccaatctctgtgttctgtggctatctatttggacttgccaaatgggaatcttatggtttgcc aggcggtatgagaatggctcctgtaaacacgatttgtgtacctacgaccacagtaacaggagacggtattgacaacgact gtgacggtctgatcgacgaggaactctgtcattctacatggcaaggaacagatgacgatggtgacggtacaaacgatgaa gactgtgctaagcctcctccaattgatggtaattgggcgaactgggtatcctggacggcgtgctcggtcacgtgcagacc aacatccggtcctacaagtggaactaaaagtcgaagcagaacctgtacgaatccggcacctcagtatgacgggaagcaat gctctggatctgggagcgaaactgtaacatgcactccctctaatagctgtatagttcatggaaattggggaagttggggc tcatacggttcttgttcggtaacatgtggttccggatcacagtccagatccagggcttgtaacaaccccgcccctgtaaa tggcgggaattcatgtgctggaagctcaactagttctaggacgtgtactttgaatccgtgcccaattgacgggtactggg cgtcgtgggggtcgtggcagacatgtactgttacctgtggaggagggacccagtccaggagccgtacctgtactaacccc gccccagctcacgggggaagccaatgttctggattcagctcttcttcacagtcctgtaacacacatcattgcccaattga cggtgcctggggaagttggtcctcatgggcgacttgttcacacacgtgtggaggcggacgtcagggtagaacgcgcacct gtaccaatccttctcctcagtacggtggcgccaactgtcccggatcctctacgtcacaacaggactgtcatacacagcca tgtccaattgacggtggactttcgtcttggtcttcctggggaacgtgtaccgtgacatgcgggggcggcacccaagatag gacgaggacttgtactaatcctacaccccagcatggcggtgctctctgcagcggagcaacatcccagtctcaagcttgca acacccaggtttgcataatcgatggttcctgggccgcatggggagtttggggaacttgttctgtgacttgtggaggcgga aagcaatcccgagctcggacatgtacagatccgcaaccacaaaatggcgggcttgactgcgtaggagcatcgagtgaaat ggcggactgtaattctcaagcttgcccaactgtggcagcagggacttaccaacagttatgtccagtcgggtggttcacgt gtcagtctggaggaatcacgtgtatagacgaaagctttaagtgcgactgcgcaaacgactgtgacgacggaagtgacgaa gattcaacgtatgcatcatgcagtcagaagttatcggccacgtgtggaaatgccgctgttccagactatgtcttacatca caagagagcttacaataatttgtttttacatctggacgcggacaaagatggtctgaaacttgacggagtggccttcagcg gagtaacttacaacacaatagccggaacggattatgtcggaggatacatagctgtaagcgacggaacccacaccgtgaga cacgactcacctatcaaaattttcggcggatatttatatggacaagctctttatgagacatatgcattcaccactggcat gagacttgccccaattaacacggtttgtgttccatccaccacaggaattggtgacggtatcgacaatgactgcgacggtt tgattgacgaggagatgtgcgacacggcaaatggcggcgctgacgacgacggagacggtgtatctgatgaagactgtgcc acgccccctccagtcgatggagcatggagtgattggtcgagttggggtacctgtacagtcacgtgcggtagtggagaaca gtctcgcgcgcgcacgtgcaccaatccctctccacaatatggtggtgccgattgtactggtgatactacagagttcaaga atgggtgtaatccatctgcctgtcctactgcaagctcaaacaactatgtccagaactgtccatcaggttggtttacatgt ctgtcaggaactataacatgtatagaagacagcttcaaatgtgattgtaataatgattgtgacgacggaagtgacgaaac agagaattacgcttcctgttctgctcaggtagtagcatattgtcaggctgccggaggttctggaaatggcgcaggcatgg ctgttttctcagcggcagtactccttttgacagcagttgtttcattgttttacactaaatactaa |
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Protein
| Protein ID | pfu_aug2.0_1137.1_24714.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1137.1_24714.t1 MNFISGAPDNRGTVFIIGFMQNHYENNDVELFVTTSRTTTVSVRVTSPRYSNPKIDSSFSITSGQVKQVFISNRLRMYNT GKDSKGLRIEGSDEVVVYGVNKETYSCDAFLAFPVDVLGTEYYACMHHPTSYAGEIMIVATEDSTSVSFRMSCTVSYGGS SYSRGQTLTLAVNQYDCVQLQTFEDLTGTYISSNKKIAFYSGNRRTRIGAGSSSDHISEQLMPVDTWGKRFATVPIPTRT TGDYFRFVASEAGTVVTVSGKRGSSNFNDQFTLSSAGSFAEKLYASNLYSLVEATKPIQIVQFVLSQQSEPADPAMIMIP PIEQYAADYVFSTPKYSYGSYTNYFVFIVSNSQRSGLRLNGNAFPSTTYNAIPGTDLVGGYIVVAEGTHTIRHTSPISVF CGYLFGLAKWESYGLPGGMRMAPVNTICVPTTTQTGDGIDNDCDGLIDEELCHDNWQNTDDDGDGKRDEDCAKPPPGRLL LLMTVVILASLDHYVKGAPDNRGTVFIIGFMQNHYENNDVELFITTSKTTTVNVRVTSPRWSNPTIDSSFSITSGQVRQV FISNRLRMYNTGKDAKGLRIEANEEVVVYGVNKETYSCDAFLAFPLDVLGNEYYACMHHPTSYAGEIMVVGTEDGTSVSF RMSCTVTYGGSTYSSGQTLTVAINQYDCVQLQTFEDLTGTYISANKNIAFYSGNRRTRIGAGSSSDHISEQLMPVATWGK RFATVPIPTRTTGDYFRFVASEAGTVVTVSGKRGSSNFNDQFTLSSAGSFAEKLYASNLYSLVEASKPIQIVQFVLSQQS EPADPAMIMIPPIEQYAADYVFSTPKYSQGSYTNYFVFIVSNSQRSGLRLNGNSFPSTTYNAIPGTDLVGGYIVVAEGTH TIRHTSPISVFCGYLFGLAKWESYGLPGGMRMAPVNTICVPTTTVTGDGIDNDCDGLIDEELCHSTWQGTDDDGDGTNDE DCAKPPPIDGNWANWVSWTACSVTCRPTSGPTSGTKSRSRTCTNPAPQYDGKQCSGSGSETVTCTPSNSCIVHGNWGSWG SYGSCSVTCGSGSQSRSRACNNPAPVNGGNSCAGSSTSSRTCTLNPCPIDGYWASWGSWQTCTVTCGGGTQSRSRTCTNP APAHGGSQCSGFSSSSQSCNTHHCPIDGAWGSWSSWATCSHTCGGGRQGRTRTCTNPSPQYGGANCPGSSTSQQDCHTQP CPIDGGLSSWSSWGTCTVTCGGGTQDRTRTCTNPTPQHGGALCSGATSQSQACNTQVCIIDGSWAAWGVWGTCSVTCGGG KQSRARTCTDPQPQNGGLDCVGASSEMADCNSQACPTVAAGTYQQLCPVGWFTCQSGGITCIDESFKCDCANDCDDGSDE DSTYASCSQKLSATCGNAAVPDYVLHHKRAYNNLFLHLDADKDGLKLDGVAFSGVTYNTIAGTDYVGGYIAVSDGTHTVR HDSPIKIFGGYLYGQALYETYAFTTGMRLAPINTVCVPSTTGIGDGIDNDCDGLIDEEMCDTANGGADDDGDGVSDEDCA TPPPVDGAWSDWSSWGTCTVTCGSGEQSRARTCTNPSPQYGGADCTGDTTEFKNGCNPSACPTASSNNYVQNCPSGWFTC LSGTITCIEDSFKCDCNNDCDDGSDETENYASCSAQVVAYCQAAGGSGNGAGMAVFSAAVLLLTAVVSLFYTKY |
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