Gene
| Gene Model ID | pfu_aug2.0_1140.1_01409 |
|---|---|
| Locus | scaffold1140.1 : 42016 ... 48560 : + |
| To GenomeBrowser | scaffold1140.1:42016..48560 |
| Genes list of scaffold | scaffold1140.1 |
| Synonym | pfu_aug1.0_4689.1_45003 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase march1 isoform x2 | GO:0002376 GO:0003824 GO:0005488 GO:0005764 GO:0008152 GO:0010008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1140.1_01409.t1 | 1 | 1 | RINGv | 42 | 91 | 6.2e-14 | 51.7 | 2.3e-17 | 1.7e-13 | 50.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1140.1_01409.t1 | gi|676485102|ref|XP_009063555.1| | hypothetical protein LOTGIDRAFT_235776 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1140.1_01409.t1 | gi|524871696|ref|XP_005092619.1| | PREDICTED: uncharacterized protein LOC101856637 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1140.1_01409.t1 | gi|532087237|ref|XP_005329330.1| | PREDICTED: E3 ubiquitin-protein ligase MARCH1 isoform X3 [Ictidomys tridecemlineatus] | 0.0 |
| pfu_aug2.0_1140.1_01409.t1 | gi|348587246|ref|XP_003479379.1| | PREDICTED: E3 ubiquitin-protein ligase MARCH1 isoformX2 [Cavia porcellus] | 0.0 |
| pfu_aug2.0_1140.1_01409.t1 | gi|512876012|ref|XP_004893834.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1140.1_01409.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1140.1_01409.t1 atggtgtctgcactgaatgatttaagtaagcgtaacgagacgcatcatgtgagctcccccacccctaagtccctggagag gagtgacaccagcctatctatggtgtctaatggaatggacgcctgtaggatatgtcagtgtgatgtgtgcgagatagacc aaaactcccctctgatttcaccatgcctgtgtgacggcagtatgaagtttgttcaccaagcttgcctacaaaaatggatc aagagttcggacaaaaccgtgtgcgagctctgtaaatacgaatacaaaatgacatccaagagcaaacctttctgcaagtg ggagaagttacagatgacgcccatagagaggagaaagataacatgttccgtgacattccacgtgattgctatcacatgtg ttatatggtccctatatgttctcatagatcgtaccacagaggaggtggaggccggggcattagactggcccttctggact aaactcattgtcgtggccatcggtttcacaggtggtctcgttttcatgtacgtacagtgtaaaatgtactacaggttgtg tatgaaatggaaaacgtttaatcgcacaatcatggtggaaaacgtaccggaggaggagagaattaagacggtttataaat cgccagaaaaacgcaagatcgaggaagaggagagaggaatatccaacgaagctttcgagggtgtcgttgtcaattccgac atgctgtga |
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Protein
| Protein ID | pfu_aug2.0_1140.1_01409.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1140.1_01409.t1 MVSALNDLSKRNETHHVSSPTPKSLERSDTSLSMVSNGMDACRICQCDVCEIDQNSPLISPCLCDGSMKFVHQACLQKWI KSSDKTVCELCKYEYKMTSKSKPFCKWEKLQMTPIERRKITCSVTFHVIAITCVIWSLYVLIDRTTEEVEAGALDWPFWT KLIVVAIGFTGGLVFMYVQCKMYYRLCMKWKTFNRTIMVENVPEEERIKTVYKSPEKRKIEEEERGISNEAFEGVVVNSD ML |
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