Gene
| Gene Model ID | pfu_aug2.0_1140.1_01418 |
|---|---|
| Locus | scaffold1140.1 : 125924 ... 130685 : - |
| To GenomeBrowser | scaffold1140.1:125924..130685 |
| Genes list of scaffold | scaffold1140.1 |
| Synonym | pfu_aug1.0_5765.1_45290 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrase core domain protein | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1140.1_01418.t1 | 1 | 1 | rve | 405 | 518 | 1.4e-24 | 86.5 | 8.8e-28 | 3.3e-24 | 85.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1140.1_01418.t1 | gi|390342995|ref|XP_003725775.1| | 0.0 | |
| pfu_aug2.0_1140.1_01418.t1 | gi|390349883|ref|XP_792400.3| | 5.00264e-43 | |
| pfu_aug2.0_1140.1_01418.t1 | gi|339257746|ref|XP_003369059.1| | putative integrase core domain protein [Trichinella spiralis] | 9.00054e-42 |
Transcript
| Transcript ID | pfu_aug2.0_1140.1_01418.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1140.1_01418.t1 atgtatacatcgacggaaatgcgttcaagaagaagagaggcattgcataaagatttgagtgtagtgcacgcgcaattgcg tacgcaaatggatatcggtggccacagaaaacgtaatgtgcaggagtcgatgcacacaacgaaaagtcgtacgccaggaa tggagggatcgtatttggggactccgagctatgatgatgatagatcaacgccaggagcaaagtcagtgccagtcatacta aagagaacgccagaagttaaagtgaagatacatgccagtgatgttatttcggcaacacacgatgcaccgcacacaccaac aacaacagcgacgccatataaacaatcaatagaagatctacagggcacattggtgacaaccttagacggatttttgcgtt tgcaggaagatgtaaacaggatgagagatcaaaactctgacatgaaactcgccagcagcagaaagatagcaggtggcgca gatgctgtagtagatccagataatattatatctaggaacaaagatgcagataagctaaagaagaaagcattattcttggg agtaagacttagaggtgcagtgcagcagatattgagtaatctaagtaatgacaagaaggcagattacaaggaactggtaa tcgcactagagaaacgattcgcaccgccaaacattgaagaactctataaagctgagctgaggatgcgacagagaaagcaa gcagaatcactgttagaattaggacaagctgtaagacgattagtgacactggcatacccaaacgtaccagaagaagttct cgacacgttgtcaaaagatagccttctcaattctctgaatgacgccgaagtacgcctaaaggttctccgagctagaccga caaacttcgatgaaacgttgcagattgctgtagaacttgatgcatttatgagagcagaagaaaagcgagcatcaaagtcg cattacaaaattgtaagaggagtagagtcgagcgatgatagaacagccgaaatcgataagctaaaatcagaattgcagca tctgaaggaactgatgcataagcagattctgagaggcagacgaggaaatcgaggaagaggcaaacccttggacagaaatg acattatttgctacaactgcaatcagaaaggacatatgagtcaaagagacatggcaagacacctcgtgcacaaatgcaaa tcacaggagcaggagcaggagcagagagttgctatggacatccttgaaccgttacctgtcacgcacaaaggaaataagta cattgtagtgattcaggactactttactaaatgggcagaggcagttcccttaccggatatggaggctaaaacagttgcgc aagctttcatagacaatttcgtaacaaaatttggagtgccacgagttttgcacccggatcaaggacgccagtttgagtca aggctattcaaacagttatgtgaaatcctgggaacaaataagacacgtactagcccctatcatccaaaatctgacggcat ggtcgagcgcatgaaccgaaccattgaaaatatgttagctacatatgtcgacgcaaatcagagaaactgggacgaacatc ttcagttagtatgcatggcgtacagagcagcagagcacgagaacacggccgttaacaaaagtaaaaatcatgaggaagat gacgactactgcgctccatactgtcctgatgtcatacttgaccccgtcagcgctccatacacctatgaagtagacagtac cgcgaactatgaaatgccggtagatcaaagagaggagttccgacatcaaagggaagatgccgcaacacccgtccataatc aaagaagacgccgacaaccgaaacgattcgaagactttcaattgtatcacgtgacacagaagaatggaattcaatctggg aaccagtatcattccaattttgacaatcggatggcacggacgaaatctacagtcagaaaacaggcagccatgcataagtg tccactatgtatagaaatattccagagtgccgaggaggtgatagataagtgtgatcactgcgagtacacttcggagagag cagtagacatgaaaaggcattgcgagcgacgccatgctctgcaatctcaaccttatgagcgggaaaggacacagacgcac gctgacggttttaccagtcgccgccgtacgcagcctatgcctgtgtacaacccgaaacggagtaagccagtcagtgccgc agacgcatcacctgagggacgacgcagcgaatgcaacgtcttttaa |
|
Protein
| Protein ID | pfu_aug2.0_1140.1_01418.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1140.1_01418.t1 MYTSTEMRSRRREALHKDLSVVHAQLRTQMDIGGHRKRNVQESMHTTKSRTPGMEGSYLGTPSYDDDRSTPGAKSVPVIL KRTPEVKVKIHASDVISATHDAPHTPTTTATPYKQSIEDLQGTLVTTLDGFLRLQEDVNRMRDQNSDMKLASSRKIAGGA DAVVDPDNIISRNKDADKLKKKALFLGVRLRGAVQQILSNLSNDKKADYKELVIALEKRFAPPNIEELYKAELRMRQRKQ AESLLELGQAVRRLVTLAYPNVPEEVLDTLSKDSLLNSLNDAEVRLKVLRARPTNFDETLQIAVELDAFMRAEEKRASKS HYKIVRGVESSDDRTAEIDKLKSELQHLKELMHKQILRGRRGNRGRGKPLDRNDIICYNCNQKGHMSQRDMARHLVHKCK SQEQEQEQRVAMDILEPLPVTHKGNKYIVVIQDYFTKWAEAVPLPDMEAKTVAQAFIDNFVTKFGVPRVLHPDQGRQFES RLFKQLCEILGTNKTRTSPYHPKSDGMVERMNRTIENMLATYVDANQRNWDEHLQLVCMAYRAAEHENTAVNKSKNHEED DDYCAPYCPDVILDPVSAPYTYEVDSTANYEMPVDQREEFRHQREDAATPVHNQRRRRQPKRFEDFQLYHVTQKNGIQSG NQYHSNFDNRMARTKSTVRKQAAMHKCPLCIEIFQSAEEVIDKCDHCEYTSERAVDMKRHCERRHALQSQPYERERTQTH ADGFTSRRRTQPMPVYNPKRSKPVSAADASPEGRRSECNVF |
|