Gene
| Gene Model ID | pfu_aug2.0_1141.1_04843 |
|---|---|
| Locus | scaffold1141.1 : 12836 ... 15484 : + |
| To GenomeBrowser | scaffold1141.1:12836..15484 |
| Genes list of scaffold | scaffold1141.1 |
| Synonym | pfu_aug1.0_9176.1_53302 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycoprotein hormone beta subunit | GO:0001664 GO:0005179 GO:0005576 GO:0009755 GO:0046982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1141.1_04843.t1 | 2 | 1 | Cys_knot | 28 | 39 | 4.5e-09 | 36.3 | 1.0 | 5000.0 | -2.4 |
| pfu_aug2.0_1141.1_04843.t1 | 2 | 2 | Cys_knot | 57 | 134 | 4.5e-09 | 36.3 | 9.2e-13 | 4.5e-09 | 36.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1141.1_04843.t1 | gi|325296725|ref|NP_001191597.1| | glycoprotein hormone beta subunit [Aplysia californica] | 1.0e-33 |
| pfu_aug2.0_1141.1_04843.t1 | gi|195116138|ref|XP_002002613.1| | GI17479 [Drosophila mojavensis] | 4.0e-18 |
| pfu_aug2.0_1141.1_04843.t1 | gi|195385160|ref|XP_002051276.1| | GJ14991 [Drosophila virilis] | 1.0e-17 |
| pfu_aug2.0_1141.1_04843.t1 | gi|442634395|ref|NP_001015386.3| | glycoprotein hormone beta 5 ortholog, isoform D [Drosophila melanogaster] | 2.0e-17 |
| pfu_aug2.0_1141.1_04843.t1 | gi|161075870|ref|NP_001104335.1| | glycoprotein hormone beta 5 ortholog, isoform A [Drosophila melanogaster] | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_1141.1_04843.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1141.1_04843.t1 atggccataacatcattagtgatagtaactctgatattgtgttaccatggaagccttatctcagcagcacttaatctgga ggagatgacgaactgttacgtaagggattacagattccaggcatctaaaccctttctcactaagtctggttacttgctac catgctctgacgtcatcaccgtcaagtcatgttggggacgctgtgattcaagtgaaattgctgattataaaattccgttt aagataagtaatcatcctgtatgcacgtacagtggggcaaagaaaagaatagtgaggttacagaactgccatcctctcca tccagatccgtattacgtcatttatgacgcattggaatgcgcgtgtacgacgtgtaatccggagtatataagctgtgaaa atctgaatggctga |
|
Protein
| Protein ID | pfu_aug2.0_1141.1_04843.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1141.1_04843.t1 MAITSLVIVTLILCYHGSLISAALNLEEMTNCYVRDYRFQASKPFLTKSGYLLPCSDVITVKSCWGRCDSSEIADYKIPF KISNHPVCTYSGAKKRIVRLQNCHPLHPDPYYVIYDALECACTTCNPEYISCENLNG |
|