Gene
| Gene Model ID | pfu_aug2.0_1142.1_08185 |
|---|---|
| Locus | scaffold1142.1 : 6427 ... 22975 : - |
| To GenomeBrowser | scaffold1142.1:6427..22975 |
| Genes list of scaffold | scaffold1142.1 |
| Synonym | pfu_aug1.0_3273.1_23272 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1142.1_08185.t1 | 2 | 1 | PDZ | 27 | 104 | 2.6e-16 | 59.5 | 1.1e-11 | 4.2e-08 | 33.2 |
| pfu_aug2.0_1142.1_08185.t1 | 2 | 1 | PDZ_2 | 35 | 107 | 2.3e-07 | 30.5 | 0.00033 | 1.2 | 9.0 |
| pfu_aug2.0_1142.1_08185.t1 | 2 | 2 | PDZ | 275 | 333 | 2.6e-16 | 59.5 | 9.1e-09 | 3.4e-05 | 23.9 |
| pfu_aug2.0_1142.1_08185.t1 | 2 | 2 | PDZ_2 | 301 | 340 | 2.3e-07 | 30.5 | 4.0e-07 | 0.0015 | 18.3 |
| pfu_aug2.0_1142.1_08185.t1 | 2 | 1 | Death | 870 | 895 | 6.7e-13 | 48.2 | 0.63 | 2300.0 | -1.6 |
| pfu_aug2.0_1142.1_08185.t1 | 2 | 2 | Death | 1128 | 1203 | 6.7e-13 | 48.2 | 1.1e-15 | 4.2e-12 | 45.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1142.1_08185.t1 | gi|524870959|ref|XP_005092258.1| | PREDICTED: uncharacterized protein LOC101853914 [Aplysia californica] | 2.0e-11 |
| pfu_aug2.0_1142.1_08185.t1 | gi|390344335|ref|XP_003726097.1| | 2.0e-09 | |
| pfu_aug2.0_1142.1_08185.t1 | gi|734600264|ref|XP_010755216.1| | PREDICTED: death domain-containing membrane protein NRADD-like isoform X2 [Larimichthys crocea] | 2.0e-07 |
| pfu_aug2.0_1142.1_08185.t1 | gi|734600262|ref|XP_010755215.1| | PREDICTED: death domain-containing membrane protein NRADD-like isoform X1 [Larimichthys crocea] | 3.0e-07 |
| pfu_aug2.0_1142.1_08185.t1 | gi|548400619|ref|XP_005738571.1| | PREDICTED: tumor necrosis factor receptor superfamily member 16-like [Pundamilia nyererei] | 8.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_1142.1_08185.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1142.1_08185.t1 atggggtcataccccatagctagatacaattaccacgagcaaaaccaacacccacccggtgtccccagggtcgtattggt cagaaaggtggcaggaaaactcggcttcaaattgcaagtaaaagagggcaacaatgagagtttcgccttaattaccaaag tgaaaccggagtgtagcttcattagtggttctcttcaccagctcgatcgaattttgaaaatctgtgatgtcgatgttacc caattgtccgaggaaaagatttttgatttgataaagattatcaataacgatgaagtaagactattagtgcagagaaatcc agaacatttagcacacgctcggcagttatcggaggggattccccagtcggcgtacaagaggcgacgagaccaggtgtcgt gtgggagcgggtcctccaacaaccaggaagctatgaagaaggtcaaggacgttatgccaaggttaattaagtccaatagt gtagacagcgataaaaaggaaccaagcgaaagtgatgctttactgaacactgacgctcgcctctttgaaacagttgactc tggtatgacgggggtggggatggtgaattctgaatttactcgcgccacctccctccaggagtatgacaccaggcctataa tagtggaggaagaggtgtacccctccatgcctctccatggctgtaaggactacctcaataataacagtactttgacaaac atggtgcctctcaaaattccaggttctcctcattttactgggagtttagaggatttgtttaaattcccccaccgtgtgat atgggacaccaccaccaaagctgtaaccctccacaccacctcgcaaggaaaatttggattctcgtataaagtgaagaaaa ataatgtggatgattggtacactctagtgaccagtgtgacgtcagaaggtccagctgatggtaaactgatgattggagat tacatacgatccatagatggtcaagccctcaaaaaccctgcagaggcgcttgatcttgaaaaaagattggagaatttagc agaggttaaaatagtgcttcagagacctgtgggcatgttgccaaaaccacaagcaaaattaatggtgcatcggcaggaac ctgattctgttagtcagcaagctgttgtcatggttccctccccaaccacttataaccacgatattctcggtaatgttcat ttaccaggcagctactctccgaccaaagtcaagggaacggcagattacaaaagacaagcaagtgctgtgtcgcaaaactc aaactcgtcaaaacgaagctctggaagtggcgaagggaggtctcgatttgatgcaaaaaagcaaagcaatgcacctgttt cgaaggactcttcacttagaacagttgggatgtttgtggtgcaacctatgccaaagcaaaattctttggatggtgactct gtgatggacattaggtccgacaaatgtagtcagaccagggtggaggaggtagaaattattgttcccaatgaaagcaaaag tgcacattttgttgaagagttgcagatcaaccaaactataaaactaccgaaagtgcgtgttttcatatgcggtagtgagg ccaggcaactggcgaaactaattttccctgaaaatactcttccagaggaatcatgtggatatagactgtttgacctcgtg aaattaactatgatgatgaaccgtgataaagtcgtcagtttctcacagtggtcactttacgaaaatttgcttcatcgagt ggaaaagtctcgttttcatgccagtaacgattcacttgataaactagacctcaaagaaagcagcatttctacgccgttgc ataaaggggcaattaatacagaattttacatagtgcctgacgagaaatttttcaaccattgttgtcagtatttattcacg aggactagcatctttctgttagcctttgatggagttaaagtgtttaattccttggacggggaaatttccagacttcagaa tatgattcatacaatcaggtgtttcattggctatgaatgtcccattttaacttacggtttgttaggaggtgaccaatcag agctcagcaatgctgtcagtatggacgaagtaaggacattgttttatacatcgtatgggaatcaaatccacaaatacaac gtgcctggaccaagtctattcagcacatgtcccactgaacaagaatgtgttgaaatacggagaagtgtatggaaagcaat aggggacaccgaggaaaaacaatacgtgctccgagcatctgtagcgatgatgcatcagttagagctccgacggcagcagg gtactgtttgtattacagaggaagagttcacacagattttccaggatttattacctagtgctgatgttggctctagacaa gtggtgtggtctgagcttaaagattttggtgaaatcctgtcatcaaatggtgctcctctttatgtgcctcaatccaagaa tctacaaaatcagctatttatagaccctcagatcttactgaccatcgtccatcactggcatacgatatcgccaaggtccg gccaagtcacggacaagcacatgttcatgaagctggtgggcagcggcaatatctcgcatacagatctggtcagcatcacc cagtgtcacaatgtcagtgtcgacagacttatctcccttctacaaggatttggactgacattccagtataaaacgaacaa caccgagcagagacaatattttgtgccttgcttcctctccgacctgatgtcgtcagaaattccgcgatcggaatcttttg aagggtgcctttatctccagtttctaaaaccgttacatctgtccagtatgatatttttccaagtttgtttcggattagac atgcacagtgagacaagagacttggatttccctggagctaactgttgtaaattcacttgtatgggctcagacgtggtgct tgttcatcagaagctgtatgacagaatccagatactagtaaacaaacgcagtggacgaatggataagttgtaccagttgt tacatgcactgttaccagagatccttggagctgagatacgctacaccctgggtcctgcctgtcctttacagtccttagac aagtgtagggtgagccactcccagcgtaacgcaggggacgtacacgtgatagacttggctgagggagcaccgtacatgtg tgggcaggaaaaattcgacaataacaagaatatcaggatgtgggtgtcaaagcatatcagccaacctgtggttcagcaag tgccaaagaacaaagagactgagtccaataaaagtttgatatcggaagaggcacctcggctccaaatgtacatcatagat ttaccttacactctgtttgagcaagtgttcagatatctacaaataaacggaggaagggactggaaacaattagccgggaa tcttggattcacgacagaacatatcctgttatttgagcagaagcccgatcctgccaaggagctccttattacgctcaacc agcaacgtagactgacgatcggtaaactgattgaggaactctctgaaatggaacgttttgacattgtagagaaactgaat gaatggcttgctactacatag |
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Protein
| Protein ID | pfu_aug2.0_1142.1_08185.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1142.1_08185.t1 MGSYPIARYNYHEQNQHPPGVPRVVLVRKVAGKLGFKLQVKEGNNESFALITKVKPECSFISGSLHQLDRILKICDVDVT QLSEEKIFDLIKIINNDEVRLLVQRNPEHLAHARQLSEGIPQSAYKRRRDQVSCGSGSSNNQEAMKKVKDVMPRLIKSNS VDSDKKEPSESDALLNTDARLFETVDSGMTGVGMVNSEFTRATSLQEYDTRPIIVEEEVYPSMPLHGCKDYLNNNSTLTN MVPLKIPGSPHFTGSLEDLFKFPHRVIWDTTTKAVTLHTTSQGKFGFSYKVKKNNVDDWYTLVTSVTSEGPADGKLMIGD YIRSIDGQALKNPAEALDLEKRLENLAEVKIVLQRPVGMLPKPQAKLMVHRQEPDSVSQQAVVMVPSPTTYNHDILGNVH LPGSYSPTKVKGTADYKRQASAVSQNSNSSKRSSGSGEGRSRFDAKKQSNAPVSKDSSLRTVGMFVVQPMPKQNSLDGDS VMDIRSDKCSQTRVEEVEIIVPNESKSAHFVEELQINQTIKLPKVRVFICGSEARQLAKLIFPENTLPEESCGYRLFDLV KLTMMMNRDKVVSFSQWSLYENLLHRVEKSRFHASNDSLDKLDLKESSISTPLHKGAINTEFYIVPDEKFFNHCCQYLFT RTSIFLLAFDGVKVFNSLDGEISRLQNMIHTIRCFIGYECPILTYGLLGGDQSELSNAVSMDEVRTLFYTSYGNQIHKYN VPGPSLFSTCPTEQECVEIRRSVWKAIGDTEEKQYVLRASVAMMHQLELRRQQGTVCITEEEFTQIFQDLLPSADVGSRQ VVWSELKDFGEILSSNGAPLYVPQSKNLQNQLFIDPQILLTIVHHWHTISPRSGQVTDKHMFMKLVGSGNISHTDLVSIT QCHNVSVDRLISLLQGFGLTFQYKTNNTEQRQYFVPCFLSDLMSSEIPRSESFEGCLYLQFLKPLHLSSMIFFQVCFGLD MHSETRDLDFPGANCCKFTCMGSDVVLVHQKLYDRIQILVNKRSGRMDKLYQLLHALLPEILGAEIRYTLGPACPLQSLD KCRVSHSQRNAGDVHVIDLAEGAPYMCGQEKFDNNKNIRMWVSKHISQPVVQQVPKNKETESNKSLISEEAPRLQMYIID LPYTLFEQVFRYLQINGGRDWKQLAGNLGFTTEHILLFEQKPDPAKELLITLNQQRRLTIGKLIEELSEMERFDIVEKLN EWLATT |
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