Gene
| Gene Model ID | pfu_aug2.0_1142.1_08188 |
|---|---|
| Locus | scaffold1142.1 : 53566 ... 57934 : + |
| To GenomeBrowser | scaffold1142.1:53566..57934 |
| Genes list of scaffold | scaffold1142.1 |
| Synonym | pfu_aug1.0_9495.1_38916 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 6 | GO:0006952 GO:0006955 GO:0007165 GO:0048584 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1142.1_08188.t1 | 2 | 1 | TIR_2 | 21 | 134 | 3.5e-10 | 39.9 | 1.3e-13 | 9.4e-10 | 38.5 |
| pfu_aug2.0_1142.1_08188.t1 | 1 | 1 | TIR | 22 | 105 | 5.4e-09 | 35.6 | 2.3e-12 | 1.7e-08 | 33.9 |
| pfu_aug2.0_1142.1_08188.t1 | 2 | 2 | TIR_2 | 140 | 152 | 3.5e-10 | 39.9 | 1.7 | 13000.0 | -3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1142.1_08188.t1 | gi|667271032|ref|XP_008570885.1| | PREDICTED: LOW QUALITY PROTEIN: toll-like receptor 1 [Galeopterus variegatus] | 4.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_1142.1_08188.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1142.1_08188.t1 atggatctgaaccaggaatggaagattgacagcttaccgcctagaaaatatcaatttgacatcttttttatttataaaaa gactccgaatacgagtacttgggttaggaatacatgcaaagccttggagcgtaacaatattgtagtaggataccacgaaa gagatttcatacctggatctccagttactgaaaacattaaaaattgcttccaactttcaaaacattttggagttctgatc actccaggcttcaatgaaagcaaattttgcaaatatgaaatgcgaatggccttggggttcaaactcgaatctactgagtc tgctgagcgccgcatcattccgctttgtttgtcgacagacgtagatgtgcctgatgaattacaacaattcactgagctag atgtaagtggaccccaggaacaatggtgtaacagacttgtatcagcaatcaaagaacccaaacttgacgattccagaaag gcaatcgatgtaattaacgaatacctgaaggtgttgaccgatatgaatatggcaacagtaatgaagtctctgagtatcct tgacaaggcaccacttgcttcagttcagcgtcagattggtttgccatcaattcaaaatatgttactttattcggttggaa taaattgtactggcaagtcggtgcagattgatttcgcaaaactcttcccaaatgatgttgaaaatacaaagcttggagaa ctatgttctgtctttaatgaggtgtgctttgataatgattttcaagcaagattgactgttgcagaagaagcaagcgaatc tttgacatctgaatgtgatctaaaattctacggaataagggattttgatcacattaagctgtctctgtcatttcgttata agcagaaaatacttataactcataatacgggacaggtagtttctatatcacatcagaatacaagcagcgctttaatgttc cttgcacaattgcaatgttcagttcaactgagatcaaaaatgagcaaacgtatcagactgcgatttcctccttacagaat caagagtcattccacgaggagaagcaagcattacaggaactatagaaaaatacttttcaaatttccagacaacagggttc gtggaagatacacatatcacagagacagttttcgtgaggatcaaggacaacggcatattagaattgacaacgagaaattt cttttggtacagaaagatgattcgcaagcttttttattctag |
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Protein
| Protein ID | pfu_aug2.0_1142.1_08188.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1142.1_08188.t1 MDLNQEWKIDSLPPRKYQFDIFFIYKKTPNTSTWVRNTCKALERNNIVVGYHERDFIPGSPVTENIKNCFQLSKHFGVLI TPGFNESKFCKYEMRMALGFKLESTESAERRIIPLCLSTDVDVPDELQQFTELDVSGPQEQWCNRLVSAIKEPKLDDSRK AIDVINEYLKVLTDMNMATVMKSLSILDKAPLASVQRQIGLPSIQNMLLYSVGINCTGKSVQIDFAKLFPNDVENTKLGE LCSVFNEVCFDNDFQARLTVAEEASESLTSECDLKFYGIRDFDHIKLSLSFRYKQKILITHNTGQVVSISHQNTSSALMF LAQLQCSVQLRSKMSKRIRLRFPPYRIKSHSTRRSKHYRNYRKILFKFPDNRVRGRYTYHRDSFREDQGQRHIRIDNEKF LLVQKDDSQAFLF |
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