Gene
| Gene Model ID | pfu_aug2.0_1142.1_08191 |
|---|---|
| Locus | scaffold1142.1 : 164209 ... 166735 : - |
| To GenomeBrowser | scaffold1142.1:164209..166735 |
| Genes list of scaffold | scaffold1142.1 |
| Synonym | pfu_aug1.0_3633.1_52047 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1142.1_08191.t1 | 1 | 1 | C1q | 45 | 166 | 1.5e-25 | 89.6 | 1.2e-29 | 1.8e-25 | 89.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1142.1_08191.t1 | gi|741952994|ref|XP_010811180.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 isoform X2 [Bos taurus] | 5.0e-16 |
| pfu_aug2.0_1142.1_08191.t1 | gi|741891002|ref|XP_010821237.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 isoform X1 [Bos taurus] | 6.0e-16 |
| pfu_aug2.0_1142.1_08191.t1 | gi|296479708|tpg|DAA21823.1| | TPA: C1q and tumor necrosis factor related protein 4-like [Bos taurus] | 9.0e-16 |
| pfu_aug2.0_1142.1_08191.t1 | gi|58332542|ref|NP_001011345.1| | complement C1q tumor necrosis factor-related protein 4 [Xenopus (Silurana) tropicalis] | 4.0e-15 |
| pfu_aug2.0_1142.1_08191.t1 | gi|742086482|ref|XP_010880626.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 4 [Esox lucius] | 5.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_1142.1_08191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1142.1_08191.t1 atgattatgatcttgtacaccttgttgatatgcctggctatggtgtctgacgtgtcttccggtcaaagtaaagcagaatg gacacttcaaaccttaagcggtattttgtgcaagagagactatcagcgtgttgctttttctgctaatttgaaatcccact acaccactcagggcaacgatcatctggtcttcgcaaatgtaatagcgaatgttggtggggactacgatcctactactggt acatttacatgccgagtccctggtctgtatcagttcagttggatgatacatcagacgaaaggacgcgcgaacagccattt ctacttagtgcgtaacaacgatgttgcgtttacgatgtatcacacaggttcaaatgataatatagcttgcacaacctatc ttcaactgaagtatggcgacactgtctggcttaaggcgtatgaagcaggtcgaacaatatttgcaaacaattatacgacg tttggcggaatgctggtttaa |
|
Protein
| Protein ID | pfu_aug2.0_1142.1_08191.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1142.1_08191.t1 MIMILYTLLICLAMVSDVSSGQSKAEWTLQTLSGILCKRDYQRVAFSANLKSHYTTQGNDHLVFANVIANVGGDYDPTTG TFTCRVPGLYQFSWMIHQTKGRANSHFYLVRNNDVAFTMYHTGSNDNIACTTYLQLKYGDTVWLKAYEAGRTIFANNYTT FGGMLV |
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