Gene
| Gene Model ID | pfu_aug2.0_1145.1_18129 |
|---|---|
| Locus | scaffold1145.1 : 90481 ... 108715 : - |
| To GenomeBrowser | scaffold1145.1:90481..108715 |
| Genes list of scaffold | scaffold1145.1 |
| Synonym | pfu_aug1.0_1248.1_36889 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1145.1_18129.t1 | 6 | 1 | Ig_2 | 13 | 83 | 1.8e-16 | 60.0 | 1.3e-08 | 1.9e-05 | 24.6 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 1 | I-set | 14 | 82 | 1.9e-18 | 66.0 | 1.1e-07 | 0.00016 | 21.4 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 1 | Ig_3 | 15 | 82 | 1.4e-13 | 51.1 | 0.00012 | 0.18 | 12.3 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 1 | V-set | 16 | 82 | 2.9e-10 | 40.0 | 0.00025 | 0.37 | 10.6 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 1 | ig | 16 | 82 | 2.5e-09 | 37.0 | 1.9e-05 | 0.027 | 14.5 |
| pfu_aug2.0_1145.1_18129.t1 | 1 | 1 | F5_F8_type_C | 129 | 261 | 2.3e-26 | 92.1 | 2.7e-29 | 4.1e-26 | 91.3 |
| pfu_aug2.0_1145.1_18129.t1 | 6 | 2 | Ig_2 | 196 | 221 | 1.8e-16 | 60.0 | 1.8 | 2600.0 | -1.4 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 2 | V-set | 204 | 228 | 2.9e-10 | 40.0 | 1.8 | 2700.0 | -1.8 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 2 | I-set | 283 | 359 | 1.9e-18 | 66.0 | 1.2e-08 | 1.8e-05 | 24.4 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 2 | Ig_3 | 286 | 357 | 1.4e-13 | 51.1 | 2.0e-08 | 3.0e-05 | 24.4 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 3 | V-set | 286 | 358 | 2.9e-10 | 40.0 | 8.0e-06 | 0.012 | 15.5 |
| pfu_aug2.0_1145.1_18129.t1 | 6 | 3 | Ig_2 | 288 | 360 | 1.8e-16 | 60.0 | 2.7e-07 | 0.0004 | 20.4 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 2 | ig | 289 | 354 | 2.5e-09 | 37.0 | 1.7e-05 | 0.026 | 14.6 |
| pfu_aug2.0_1145.1_18129.t1 | 6 | 4 | Ig_2 | 389 | 457 | 1.8e-16 | 60.0 | 3.5e-06 | 0.0052 | 16.8 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 4 | V-set | 390 | 462 | 2.9e-10 | 40.0 | 6.5e-06 | 0.0097 | 15.7 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 3 | I-set | 391 | 458 | 1.9e-18 | 66.0 | 9.7e-05 | 0.14 | 11.9 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 3 | ig | 392 | 457 | 2.5e-09 | 37.0 | 0.0001 | 0.16 | 12.1 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 3 | Ig_3 | 395 | 458 | 1.4e-13 | 51.1 | 2.0e-05 | 0.029 | 14.8 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 4 | I-set | 473 | 494 | 1.9e-18 | 66.0 | 0.031 | 46.0 | 3.9 |
| pfu_aug2.0_1145.1_18129.t1 | 6 | 5 | Ig_2 | 473 | 493 | 1.8e-16 | 60.0 | 0.093 | 140.0 | 2.6 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 4 | Ig_3 | 473 | 483 | 1.4e-13 | 51.1 | 2.0 | 3000.0 | -1.2 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 5 | V-set | 473 | 487 | 2.9e-10 | 40.0 | 0.098 | 140.0 | 2.3 |
| pfu_aug2.0_1145.1_18129.t1 | 4 | 4 | ig | 474 | 482 | 2.5e-09 | 37.0 | 2.4 | 3500.0 | -1.8 |
| pfu_aug2.0_1145.1_18129.t1 | 1 | 1 | 7tm_1 | 530 | 701 | 1.9e-08 | 33.7 | 2.0e-11 | 2.9e-08 | 33.1 |
| pfu_aug2.0_1145.1_18129.t1 | 6 | 6 | Ig_2 | 593 | 607 | 1.8e-16 | 60.0 | 10.0 | 15000.0 | -4.1 |
| pfu_aug2.0_1145.1_18129.t1 | 5 | 5 | Ig_3 | 594 | 606 | 1.4e-13 | 51.1 | 10.0 | 15000.0 | -3.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1145.1_18129.t1 | gi|260790385|ref|XP_002590223.1| | hypothetical protein BRAFLDRAFT_233396 [Branchiostoma floridae] | 4.0e-22 |
| pfu_aug2.0_1145.1_18129.t1 | gi|512831395|ref|XP_004913171.1| | 7.0e-22 | |
| pfu_aug2.0_1145.1_18129.t1 | gi|617524719|ref|XP_007545014.1| | PREDICTED: adipocyte enhancer-binding protein 1-like, partial [Poecilia formosa] | 1.0e-21 |
| pfu_aug2.0_1145.1_18129.t1 | gi|260790405|ref|XP_002590233.1| | hypothetical protein BRAFLDRAFT_233441 [Branchiostoma floridae] | 2.0e-21 |
| pfu_aug2.0_1145.1_18129.t1 | gi|260790369|ref|XP_002590215.1| | hypothetical protein BRAFLDRAFT_233355 [Branchiostoma floridae] | 2.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_1145.1_18129.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1145.1_18129.t1 atgaaaatatttccaaaggaggaaagaataataacatttacaaacgagcaagcagtattgacgtgtgaatattcagggaa tgaaaaactaagaccgacatggcgcaaggatgtgaaaaagaaagtaggtgacttccggttcacgagtaatctgcgcactg tgataggaagtgaggtgacttccattttgaaaataacaaagcgtgctatagaaccaagcgacgccggagagtacacgtgt tctgccggcccgttaacaaaatcagtcattttggaagtacacaatggtccatgtgggaacatgctggtatctggacaaca tggcgtcccggaccaaaatatggaagcctcgtctttttacgaagacacccggtatcacgatgggccatcacgtgcccggc tgaatcaggaaccggaggaaaactcaaacaaagatggcgaccttgtaacgcaaggtggtggttggctcgctggatcatcc gacagaaatcagtggattcaggttaagctgaaaacacaaagcgtagtgagagaaatcctcattcaggggaggtcatcgga agattgctgtaaccaatcacagagggtgacacagttcaaatttcaatacagcaaagatggcgtcacatgggcgaagtaca aggaccaatcaggcaatttgctgttctttcgagggaattatgaccaggatacggttgtgtccagacgtttaccttttccc gtgatagcccgatatgttcgtattgtacctacagagtggaacgaaaatatcgccctcagatttgacattaaaggttgctc cattcccaaaaatatacgaatgatttacccaaaccaagatttcataaatattgaggtcccaaagaagcttgaaattacct gcgaatatactggaccatcaaacgctaacatcacctggttcaaagatggctaccggatattgcatcatcatggcttcaca ttgaaatcaaccataactctgaagaatggaaggacaactgttgtgtcttctttatttaaagtatcgacggtctactcaga ttccggaaaatatagttgcaaaattgaaaacacaacactgactaaagctgtggcggtacatgcagatttatcttttctat ttcaagtcaggtttgataaacttccgagctacagtcgctactggctggttcacggcagtcctttccatctatcgtgtacc tacaaatctcgagaaaaacgacagttcacttgggaatacgaaaatatgtacataggaagtttcggatttgatgtcaattc agaggccaaggtgaaagatggcgccgtggaactgacatcatcggtgtcaaagacgagcgttagtagaaaggacgagggaa agtatacatgtctgattggcggaatggagaagcaatgggacgtccgtgtacttaaacaaagtgaggatgcagggagatat gaatgtaatattttacttgaggccaggaccacgcaaactcagcaagttgtcattgtcaaggaaatccatgcgcagtggat gcttattcatccttgcaatcgtggcggagcgtttcaccgcggtatggttcccgctgaaactaagaaaacgtggacaaaaa caacagctcacgtcatcattgtcgcaatagccgttcttattttggcggaaatgatcggcactgttgaccttttgctgttt tcgttgaatgaacgagttccggaacagggcctcgtatctgcaggcgcagagtctctaagatatttacgcgccaaaagtcc tttcatcaagacatggtcgttcactttatgctgcatactggacttggttccgaatcctgccatcatgattttcaacgtgc tgatcattattggcatcagaagaagcctgataataaggaggaaaatgacgaccagtacacaggaacaaaacaacagagag ctgaaaaaaacaaggatgcttctagggatgtcccttctgtttaccatactctgcagtccatactacgtatatgtatacct attgttttttgacgccatccgttctactgatttaccggttgtgatgtatgaattgttcaaattgtcgaatttgttgaaca gcgctataaacattgtagtctatggaatcaatgatccagttctgagaggaaaatacataaacttgtggcgatgtaggtct taa |
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Protein
| Protein ID | pfu_aug2.0_1145.1_18129.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1145.1_18129.t1 MKIFPKEERIITFTNEQAVLTCEYSGNEKLRPTWRKDVKKKVGDFRFTSNLRTVIGSEVTSILKITKRAIEPSDAGEYTC SAGPLTKSVILEVHNGPCGNMLVSGQHGVPDQNMEASSFYEDTRYHDGPSRARLNQEPEENSNKDGDLVTQGGGWLAGSS DRNQWIQVKLKTQSVVREILIQGRSSEDCCNQSQRVTQFKFQYSKDGVTWAKYKDQSGNLLFFRGNYDQDTVVSRRLPFP VIARYVRIVPTEWNENIALRFDIKGCSIPKNIRMIYPNQDFINIEVPKKLEITCEYTGPSNANITWFKDGYRILHHHGFT LKSTITLKNGRTTVVSSLFKVSTVYSDSGKYSCKIENTTLTKAVAVHADLSFLFQVRFDKLPSYSRYWLVHGSPFHLSCT YKSREKRQFTWEYENMYIGSFGFDVNSEAKVKDGAVELTSSVSKTSVSRKDEGKYTCLIGGMEKQWDVRVLKQSEDAGRY ECNILLEARTTQTQQVVIVKEIHAQWMLIHPCNRGGAFHRGMVPAETKKTWTKTTAHVIIVAIAVLILAEMIGTVDLLLF SLNERVPEQGLVSAGAESLRYLRAKSPFIKTWSFTLCCILDLVPNPAIMIFNVLIIIGIRRSLIIRRKMTTSTQEQNNRE LKKTRMLLGMSLLFTILCSPYYVYVYLLFFDAIRSTDLPVVMYELFKLSNLLNSAINIVVYGINDPVLRGKYINLWRCRS |
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