Gene
| Gene Model ID | pfu_aug2.0_1158.1_28095 |
|---|---|
| Locus | scaffold1158.1 : 1 ... 22662 : + |
| To GenomeBrowser | scaffold1158.1:1..22662 |
| Genes list of scaffold | scaffold1158.1 |
| Synonym | pfu_aug1.0_14548.1_18137 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1158.1_28095.t1 | 2 | 1 | RhoGEF | 113 | 289 | 4.0e-33 | 114.7 | 2.7e-37 | 4.0e-33 | 114.7 |
| pfu_aug2.0_1158.1_28095.t1 | 2 | 2 | RhoGEF | 418 | 446 | 4.0e-33 | 114.7 | 0.3 | 4400.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1158.1_28095.t1 | gi|676472238|ref|XP_009059426.1| | hypothetical protein LOTGIDRAFT_234067 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1158.1_28095.t1 | gi|572269201|ref|XP_006612624.1| | PREDICTED: rho guanine nucleotide exchange factor 10-like isoform X3 [Apis dorsata] | 0.0 |
| pfu_aug2.0_1158.1_28095.t1 | gi|645002372|ref|XP_008209944.1| | PREDICTED: rho guanine nucleotide exchange factor 10-like protein [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_1158.1_28095.t1 | gi|260841552|ref|XP_002613976.1| | hypothetical protein BRAFLDRAFT_67458 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1158.1_28095.t1 | gi|390336517|ref|XP_003724362.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1158.1_28095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1158.1_28095.t1 tggcagatgaaggggagtcgatctacgaggatgtggatggggcatttgatcataaatctgacacccttgtctctactgtt tctaacgagtcgtggggctcggatttctcagatgcggaagataaagttctagaagatgagtcataccctgccagaccttt accgcccacgccaaaaagggggcatttcaaaagttacagtgacgaagaacagcgtgatgaagattgcccagtacaacctg tcaaaataaaccttgagaaacaccctccccctgaattaccagacacaccaaaaaaccttactggagaccaggacaagaag aggagagtgattggttgtatcatagacagtgaaagatcgtatatatcatctctagagagaattatacaggagtacaagac gacccttctgtatacttacaacttagccaagacgtgtgtgaaaacaatcataacgaaggcagaggcaattctggattttc acagaatgtttcagatagaattagcagatgcagtcagtacctgggacgtaaaggagaccatcgggggaatttttactgca tcgttttcccgttctatggttgtggatgtctacagtacgtatgtaaataactttgccatggcgatggaggagatcaaatc tagccagaatatcaatgctgggctaaaggaatttctaagtagcacagcacagaagagttcagacagactgacagtctttg ccttaatggtcaaaccagtacaaagatttcctcagtttattatgtttatgcaggatctactgaaatataccccacacaat caccatgaccgttcagctttacagagagcgctgacggatctagaaaacgtagctcacaaactgaatgagaggaaacggga gtcggaacaaatattcaatgccaagcagttacagaaaacactgaattataaagtcccaacggaaaaagtacagagattga ttagacaagaacatttagaacaaatggagacagtatcgggccaggtgagaacaaagggacgacaggttatactgatggac gactccttgatatgctgttctattctacaaagtatttacagtacagtagtagagaacaaggaagaagacttgtaccatct taactcagacctgcaggactacatgcatgacatagctgtacttaaccagatcagtgggctgatgtctacactcaaaaaca tgtacgagggtctaacagtggaacttgttgatgagacgataggcgaccttcagaagaagatccaggtcaaggatcaacag ctacaattagtcaacagttgttctatcatactacaggacatttcaaggaagacgcggtacattttccaaacacagactcc ggagcagaaacaagaatggtgtatagactttctgatggcacggctcactcaagatcctcaaaacaatcctagctgggata tgtctagtatgggtgccatagagagtgatatcatacaccaacctgctatgtatatgaaatccatgtcagtagatatgccc agacattacacacaggtaaagtgtgccgtgccagtattcttgacgccatcggggtcacatgacattagcatccagcatct ttgggtcgtaacgacgtcagatgtgcgtgcccaggtgtcactcgtctccatacaaaccacaaagccggtacttatcgagt ctttccaggcagcggacacagaaatcattgccgtggaaacggtaccgggtttcgctacgatagagcagaacaatgctttt cttgaggacacagtgtggatgtcaacatgtgattccaggatacttgtatacagcctgtttgacgaggacggtatacgaag gaaaacaacgggtgccaggaaaccccgtagtaacttttactgtcatggcgtggccttggtgatcagatacgcagacgatc gggtatttgtgggacttgataacggcaatcttgtcatatacgacagaaatgaggatggagcttggatgattgacagtcca aatattgtacagatgacgtcagacgtttctgtatcgtgtatcctggccatagaagacgagatttgggtggcctgtggtga tacattctatattgtacctgtcgatgaatgtttgtatcagggaatgaatggtgctgatgaggacagtgtgtttacttctg aaacgaaagaaaaagcagcatcaagcgggaatttgcagaatgatgccaagaagctggtggacgtagtaagtgataagaaa aatgatgaactacaaagtgaagaccttgtcccagaaatgggtagtattagaaggtcatggtcattagatgaccttgagaa aagtacagagaaagatccagtgcagttaagagacgatcatcataagattgtaaattcgaagaacaaacgcaaaactctta cgctaagaactgagctcgctcaaaaaattcaggcacgacagaaagctatcgggactttaaaaggttctgatgagaacgaa gtggatagattctttggggatttaatgaactcacaagacagaaaatcagacgaaagcattgccaaaacatcaacgcttga aggggagacaacttctattaaggaggaagaacaggagtcgtcgaagaaaaaaacgcaacaaactaaaaaatcaaagaggt tttctttcagcaaagacaaagatttaagttcatcaccggatagaggagggacttttaaaagttttcgcaaaaatttgcca tcgtttcagttcaagggacgatcaagaagtacagtagggggtgaaagtgtgacgaaatccccatcggttcggaacagtcc aaatgatcgaaacgtgacgtacgaaacaatgagaaaaaggaactgtaacgctgttattgtgatcagtgggggtgatggtt atattgactggagaaaggaaaagaatattgactttcagaaaaactcagaggcatctctaatgacatggatgtacaagtac tga |
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Protein
| Protein ID | pfu_aug2.0_1158.1_28095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1158.1_28095.t1 ADEGESIYEDVDGAFDHKSDTLVSTVSNESWGSDFSDAEDKVLEDESYPARPLPPTPKRGHFKSYSDEEQRDEDCPVQPV KINLEKHPPPELPDTPKNLTGDQDKKRRVIGCIIDSERSYISSLERIIQEYKTTLLYTYNLAKTCVKTIITKAEAILDFH RMFQIELADAVSTWDVKETIGGIFTASFSRSMVVDVYSTYVNNFAMAMEEIKSSQNINAGLKEFLSSTAQKSSDRLTVFA LMVKPVQRFPQFIMFMQDLLKYTPHNHHDRSALQRALTDLENVAHKLNERKRESEQIFNAKQLQKTLNYKVPTEKVQRLI RQEHLEQMETVSGQVRTKGRQVILMDDSLICCSILQSIYSTVVENKEEDLYHLNSDLQDYMHDIAVLNQISGLMSTLKNM YEGLTVELVDETIGDLQKKIQVKDQQLQLVNSCSIILQDISRKTRYIFQTQTPEQKQEWCIDFLMARLTQDPQNNPSWDM SSMGAIESDIIHQPAMYMKSMSVDMPRHYTQVKCAVPVFLTPSGSHDISIQHLWVVTTSDVRAQVSLVSIQTTKPVLIES FQAADTEIIAVETVPGFATIEQNNAFLEDTVWMSTCDSRILVYSLFDEDGIRRKTTGARKPRSNFYCHGVALVIRYADDR VFVGLDNGNLVIYDRNEDGAWMIDSPNIVQMTSDVSVSCILAIEDEIWVACGDTFYIVPVDECLYQGMNGADEDSVFTSE TKEKAASSGNLQNDAKKLVDVVSDKKNDELQSEDLVPEMGSIRRSWSLDDLEKSTEKDPVQLRDDHHKIVNSKNKRKTLT LRTELAQKIQARQKAIGTLKGSDENEVDRFFGDLMNSQDRKSDESIAKTSTLEGETTSIKEEEQESSKKKTQQTKKSKRF SFSKDKDLSSSPDRGGTFKSFRKNLPSFQFKGRSRSTVGGESVTKSPSVRNSPNDRNVTYETMRKRNCNAVIVISGGDGY IDWRKEKNIDFQKNSEASLMTWMYKY |
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