Gene
| Gene Model ID | pfu_aug2.0_116.1_20261 |
|---|---|
| Locus | scaffold116.1 : 5616 ... 26440 : + |
| To GenomeBrowser | scaffold116.1:5616..26440 |
| Genes list of scaffold | scaffold116.1 |
| Synonym | pfu_aug1.0_2511.1_15848 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sorting nexin-17 isoform x1 | GO:0005488 GO:0043231 GO:0044444 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_116.1_20261.t1 | 1 | 1 | PX | 13 | 101 | 3.3e-13 | 49.4 | 8.9e-17 | 6.6e-13 | 48.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_116.1_20261.t1 | gi|524880319|ref|XP_005096825.1| | PREDICTED: sorting nexin-17-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_116.1_20261.t1 | gi|524880317|ref|XP_005096824.1| | PREDICTED: sorting nexin-17-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_116.1_20261.t1 | gi|676484078|ref|XP_009063230.1| | hypothetical protein LOTGIDRAFT_235573 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_116.1_20261.t1 | gi|514736295|ref|XP_005017499.1| | PREDICTED: sorting nexin-17 isoform X1 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_116.1_20261.t1 | gi|260790042|ref|XP_002590053.1| | hypothetical protein BRAFLDRAFT_240864 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_116.1_20261.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20261.t1 atgcatttttcgattcctgatacacaagaactgaaggatgattccggttccatgtacacgagtttcaacatccacataaa tggagtgtttcattgcaccatacgttacagtcatctatttacattctatgaaacgctgaagagagaatttggagcaggaa atcttccaccatttcccccgaagaagtttttgccgttatctcctataaaggtcgaggaaagacgtcagcatctcgaaagg ttcattcagattgtgagtcaagaccctcagatatcaaatagtgatgttttcaatggattcttccttaatgctcagcagga gacacagaaggagaaagcggaggctgtatcgttagatgtgttcttgatgaacggccacaaaattaccgttaaaatcatgt ccactgatcaaactgacgatgtattagaggtactgtattgtactgatgatgtattagaagtactgtattgtactgatgat gtattagaggtactgtattgtactgatgatgtattagaggagacacagaaggagaaagcggaggctgtatcgttagatgt gttcttgatgaacggccacaaaattaccgttaaaatcatgtccactgatcaaactgacgatgtattagaggtactgtatt gtactgatgatgtattagaagtactgtattgtactgatgatgtattagagtcagttgcctctcagatagagcttccagat gagtttgtttactactttggattgttccttgttcagaaagaggaagagggagataactccttggttcggaagcttcagga atttgagtctccatttatctcattaaaatatgcaaataaacaaggtgttcatcgcattgtgctgcgaaaaagtttttggg attccagctatgaggatgatctacttgataacaaagttgctatgaatctcctgtacattcaggctgtgagtgatatagaa agactatggactctgggaacaaaggaacagatcaaacatttggcaactctccaacaaagaggctccaaaagggagtattt acgattggcaagaacaatgaagtactatggttacattcagttcaaaccgtgctacacagattacccaaatcatggttgtc gtgtgttagtggcagcagggcatcgagagctgaacttccgaattcaaacagattctaattcagtaaaggagggcagtttc aaaataaccaggatgagatgctggagaatcaccacatctgtcccagaggatgaggagataatcatggacaaggacaggaa gaggaaactggaattgtcgtttgaatatctcatggccaaagatacattacagtggatttcattgaccacagaccaaccac aggatagaccaaaaggcggatcagctccagccgtgaagagagacaacagttatggtttttcacttaacaaacagttcact attcctagtccagatcaggatgagccaaaaggcaaaaatgataagaacgataaaagtgtgatatcaaacaatgcatttga cactatcggagatgacgatttgtga |
|
Protein
| Protein ID | pfu_aug2.0_116.1_20261.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20261.t1 MHFSIPDTQELKDDSGSMYTSFNIHINGVFHCTIRYSHLFTFYETLKREFGAGNLPPFPPKKFLPLSPIKVEERRQHLER FIQIVSQDPQISNSDVFNGFFLNAQQETQKEKAEAVSLDVFLMNGHKITVKIMSTDQTDDVLEVLYCTDDVLEVLYCTDD VLEVLYCTDDVLEETQKEKAEAVSLDVFLMNGHKITVKIMSTDQTDDVLEVLYCTDDVLEVLYCTDDVLESVASQIELPD EFVYYFGLFLVQKEEEGDNSLVRKLQEFESPFISLKYANKQGVHRIVLRKSFWDSSYEDDLLDNKVAMNLLYIQAVSDIE RLWTLGTKEQIKHLATLQQRGSKREYLRLARTMKYYGYIQFKPCYTDYPNHGCRVLVAAGHRELNFRIQTDSNSVKEGSF KITRMRCWRITTSVPEDEEIIMDKDRKRKLELSFEYLMAKDTLQWISLTTDQPQDRPKGGSAPAVKRDNSYGFSLNKQFT IPSPDQDEPKGKNDKNDKSVISNNAFDTIGDDDL |
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