Gene
| Gene Model ID | pfu_aug2.0_116.1_20263 |
|---|---|
| Locus | scaffold116.1 : 44636 ... 53040 : + |
| To GenomeBrowser | scaffold116.1:44636..53040 |
| Genes list of scaffold | scaffold116.1 |
| Synonym | pfu_aug1.0_2511.1_15846 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| endoplasmic reticulum-golgi intermediate compartment protein 3 isoform x2 | GO:0005789 GO:0005794 GO:0016021 GO:0016192 GO:0033116 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_116.1_20263.t1 | 1 | 1 | COPIIcoated_ERV | 1 | 90 | 3.9e-30 | 105.1 | 1.2e-33 | 4.5e-30 | 104.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_116.1_20263.t1 | gi|676443506|ref|XP_009050136.1| | hypothetical protein LOTGIDRAFT_142052 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_116.1_20263.t1 | gi|731487558|ref|XP_010589943.1| | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X2 [Loxodonta africana] | 0.0 |
| pfu_aug2.0_116.1_20263.t1 | gi|671011110|ref|XP_008696376.1| | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X2 [Ursus maritimus] | 0.0 |
| pfu_aug2.0_116.1_20263.t1 | gi|593710424|ref|XP_007101787.1| | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X2 [Physeter catodon] | 0.0 |
| pfu_aug2.0_116.1_20263.t1 | gi|667239548|ref|XP_008568949.1| | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X3 [Galeopterus variegatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_116.1_20263.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20263.t1 atgatgttctcatactatatcaaagttgttccaaccacctatgttaaggtcgatggaaaaacactttacaccaaccaata ttcagttaccaagcattccaaagtggtcggaggtagcacaggggaaacaggattaccgggggcattttttatatatgagt tatctcccatgatggtaaaatacacagaaaaacgtaggtcattcatgcattttcttactggtgtttgtgccataataggt ggagtatttacagttgcaggtttaatagactctatgatttaccattcggccagagctttacagaagaagatagatttagg aaaggccacgtga |
|
Protein
| Protein ID | pfu_aug2.0_116.1_20263.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20263.t1 MMFSYYIKVVPTTYVKVDGKTLYTNQYSVTKHSKVVGGSTGETGLPGAFFIYELSPMMVKYTEKRRSFMHFLTGVCAIIG GVFTVAGLIDSMIYHSARALQKKIDLGKAT |
|