Gene
| Gene Model ID | pfu_aug2.0_116.1_20264 |
|---|---|
| Locus | scaffold116.1 : 54086 ... 120078 : + |
| To GenomeBrowser | scaffold116.1:54086..120078 |
| Genes list of scaffold | scaffold116.1 |
| Synonym | pfu_aug1.0_30677.1_26536 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| arginine--trna cytoplasmic | GO:0004814 GO:0005524 GO:0005634 GO:0005739 GO:0006420 GO:0016020 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_116.1_20264.t1 | 1 | 1 | Arg_tRNA_synt_N | 83 | 167 | 3.1e-18 | 66.0 | 2.3e-21 | 1.1e-17 | 64.2 |
| pfu_aug2.0_116.1_20264.t1 | 1 | 1 | tRNA-synt_1d | 176 | 526 | 0.0 | 401.1 | 0.0 | 0.0 | 400.4 |
| pfu_aug2.0_116.1_20264.t1 | 1 | 1 | DALR_1 | 540 | 666 | 4.0e-32 | 110.6 | 2.9e-35 | 1.4e-31 | 108.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_116.1_20264.t1 | gi|676489093|ref|XP_009064825.1| | hypothetical protein LOTGIDRAFT_196660 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_116.1_20264.t1 | gi|45361659|ref|NP_989403.1| | arginine--tRNA ligase, cytoplasmic [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_116.1_20264.t1 | gi|556964081|ref|XP_005991870.1| | PREDICTED: arginine--tRNA ligase, cytoplasmic isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_116.1_20264.t1 | gi|348574911|ref|XP_003473233.1| | PREDICTED: arginine--tRNA ligase, cytoplasmic [Cavia porcellus] | 0.0 |
| pfu_aug2.0_116.1_20264.t1 | gi|543359480|ref|XP_005523521.1| | PREDICTED: arginine--tRNA ligase, cytoplasmic [Pseudopodoces humilis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_116.1_20264.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20264.t1 atgtcggacatagcacttatgactgctagggcagaacaagcggaggcagaaataaagaaacttgaagatgagattgcctt gctccaggatccgcaaagaatgatagcaaatggagttgtgtcccctgctctagaagtactccaaacggaaaatgcaaaac ttatgtaccaaatcaatcacctaaaaaggaacattgagaaagagaaatccaggaaaccaaacacaatgctgagtatcagt gggatagtagaggaggtgtttgctgtagctattaggagggcgtatcccgacctggatggagcacctgtcatgatacaggg tagctctaaattcgctgactatcagtgtaacagtgctatgagcatagtggcgctattgaagaaacaaggagagaatgtaa atccaaatgctgtggccaccaagatagtacaaaatataccacaatcagagttttttgaaaaggtggaaattaaaggacca ggctttatcaacatctacctcaataaggagtttgtctcacagcagattagtgatgttctgaaccaaggggtacgaccccc gagtgtaggggtcaaaaagagacccgttgtggatttctcttctcctaacattgcaaaagaaatgcatgttggacatttga ggtctacaatcattggagaaagcatatgtcgattactagaatgggttggccatgatgtactgcgtattaaccatctggga gactggggaactcagtttggaatgctcatagctcatctaaaagaaaagtttcctaattaccaaacggtatcccctcctat agcagatctacaagctttctataaggaatcaaaaaagcgttttgatgaagatgaagaattcaagaagcgagcgtatgact cggtagttaaactacagaattacgattcagatcacatgaaagcatggaatctcatttgtgatgtatccaggaaagaattt acaaagatatatgaacgactcggagtaaaaatcatagataggggagaatcattttatcaggagaggatgaaagacgttgt caaagaacttgaggaacgaggattcctggaggaagatgagggacgtaaggtgatgtttgttccagggtttggagtcccac tcacgatagttaaatcagacggcgggtttacatacgccacctcagacatggccgccattaaaaatcgtttatttgaagaa aatggtgattggctggtttatgtagtagatgcaggccagggcacacatttacagacaatatatgctgcagcacagatgat gggctggtacaatcctaactggtacaaccccaagttaacacgagtagaacatgttgcgtttggtgtggtgctaggagaag acaagaagaagttcaagacgcggtctggtgatacggtgaaactggccgacctgttagacgagggaatcgccagagctgaa caaaaactaaaggaaaaaggacgtgataaggaactgacagcacaggagctagacgcagtgaagaagtcagtggcatatgg ctgtatcaaatatgcagacctggctcacaacagaaatcatgattatgtcttctcctttgataagatgttggatgatcggg gtaacactgctgcctatctcctatatgcatacaccaggatcaggtccatagccagaaattcaggtgtgtctcaggagcaa ctcaagtctgcagcctccagtacaaaaataaagttagaccatcccaaggagtggaacctagctaaatgtgtactacgact cccagaaattatactgcgctgcctggattcactcctgcttcacactctctgtgaatacctgtacgaacttgccaacacct ttactgagttctatgacagctgttactgtatagagaaggataagaaaacaggagctatagtgaaggtggatatgagtcga cttttactttgtgaggctacagcaagtatcatagctgcaggatttcatattctgggaatagaccccctacaaaaaatgtg a |
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Protein
| Protein ID | pfu_aug2.0_116.1_20264.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20264.t1 MSDIALMTARAEQAEAEIKKLEDEIALLQDPQRMIANGVVSPALEVLQTENAKLMYQINHLKRNIEKEKSRKPNTMLSIS GIVEEVFAVAIRRAYPDLDGAPVMIQGSSKFADYQCNSAMSIVALLKKQGENVNPNAVATKIVQNIPQSEFFEKVEIKGP GFINIYLNKEFVSQQISDVLNQGVRPPSVGVKKRPVVDFSSPNIAKEMHVGHLRSTIIGESICRLLEWVGHDVLRINHLG DWGTQFGMLIAHLKEKFPNYQTVSPPIADLQAFYKESKKRFDEDEEFKKRAYDSVVKLQNYDSDHMKAWNLICDVSRKEF TKIYERLGVKIIDRGESFYQERMKDVVKELEERGFLEEDEGRKVMFVPGFGVPLTIVKSDGGFTYATSDMAAIKNRLFEE NGDWLVYVVDAGQGTHLQTIYAAAQMMGWYNPNWYNPKLTRVEHVAFGVVLGEDKKKFKTRSGDTVKLADLLDEGIARAE QKLKEKGRDKELTAQELDAVKKSVAYGCIKYADLAHNRNHDYVFSFDKMLDDRGNTAAYLLYAYTRIRSIARNSGVSQEQ LKSAASSTKIKLDHPKEWNLAKCVLRLPEIILRCLDSLLLHTLCEYLYELANTFTEFYDSCYCIEKDKKTGAIVKVDMSR LLLCEATASIIAAGFHILGIDPLQKM |
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