Gene
| Gene Model ID | pfu_aug2.0_116.1_20277 |
|---|---|
| Locus | scaffold116.1 : 429470 ... 459425 : - |
| To GenomeBrowser | scaffold116.1:429470..459425 |
| Genes list of scaffold | scaffold116.1 |
| Synonym | pfu_aug1.0_2.1_14625 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_116.1_20277.t1 | 2 | 1 | Fibrinogen_C | 78 | 102 | 3.5e-31 | 108.6 | 0.39 | 1900.0 | -1.9 |
| pfu_aug2.0_116.1_20277.t1 | 3 | 1 | F5_F8_type_C | 98 | 185 | 2.3e-07 | 30.7 | 4.6e-11 | 2.3e-07 | 30.7 |
| pfu_aug2.0_116.1_20277.t1 | 2 | 2 | Fibrinogen_C | 307 | 446 | 3.5e-31 | 108.6 | 7.2e-35 | 3.5e-31 | 108.6 |
| pfu_aug2.0_116.1_20277.t1 | 3 | 2 | F5_F8_type_C | 334 | 368 | 2.3e-07 | 30.7 | 0.22 | 1100.0 | -0.6 |
| pfu_aug2.0_116.1_20277.t1 | 3 | 3 | F5_F8_type_C | 394 | 420 | 2.3e-07 | 30.7 | 0.26 | 1300.0 | -0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_116.1_20277.t1 | gi|751443258|ref|XP_011196313.1| | PREDICTED: microfibril-associated glycoprotein 4-like [Bactrocera cucurbitae] | 5.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_116.1_20277.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20277.t1 atgatactaacatatgcttatatattacgggtttacagaaaagtttacagatatctcagagcaaagaagggggctacgaa gagtgtaaagagatcgtgtcctgaggcagcaacatgtacacctttgaaatcagggggaaatgcatgtgtcgatctgatcg atcacatagggtactgctctacaaacagatatcttgtcacgggtaaatacggtgtacagaaagaccgagtaagcttctct accgtcagaaatcagtatcctgaagattactggtaccaacttgatagtttgcatggatggacgccagcttcaatggatca gcatcaatggattcaggttttattctacagacggagatttgtcaccggcatcgtcacaagaggtttcgcaaaagccgaat ataactcgtatgtgtcagagtatcgtttggagttcttatccatgagttatacatggcgttctgttttgaatgattcagga aacgttaagattttcccgggaaatattaactgggacacagcaaagattaattacttgcctcgtccactaagagcagcagt ttttggtgggtatgaaccgattaatgcccagtatcttccaccattcaatacctgtcctgcagccaaatttatagaaaata ttaggcacttatatcttaagaaatattgggaaattgccgttttaaagatactctatgaagaaaagcagatacaggcagaa aaagatagagtgactctgcagatggaaatgaactcaacagttgaacagcttcagcggcgaaacgatcgattatatggttt ggtagaccaaacaaaagttaaccacatgcgactaccggtttcaaaatggcggacgttttggatctacacgaaatcgaaga aggaggagacgagtttgaagttgatgaagagggagatcactatctttgcaagagatgaaacaaagaccaataacttcaca agatcctggatcgattataaaataggattcggaagtgtacctgagaactactggataggaaatgcaataatgcatgaatt aacaaaagaccgaccttccgaagtgtacttcaaactgacggacgacaaaaatataacgaagtgggcaaaataccaaaatt ttacgatcggaccagaagaggaacaattcattctgaatgtcaatgacacttcttatgaaggaacagcaggtgacgcacta atttatggtaaacacaatgcttggtcggtgaatggaatggctttcagcacgtatgatatggataatgacagacataagaa atacaaatgtgctgcggatggcggatggtggatgaataaatgtggcgtatcaccacttactcttactgcaatgtggtggg tggagagccggagatccgtacatgtaaaaccgcgagatgatctaaagaaagtggcaatgatgatacgtttttga |
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Protein
| Protein ID | pfu_aug2.0_116.1_20277.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20277.t1 MILTYAYILRVYRKVYRYLRAKKGATKSVKRSCPEAATCTPLKSGGNACVDLIDHIGYCSTNRYLVTGKYGVQKDRVSFS TVRNQYPEDYWYQLDSLHGWTPASMDQHQWIQVLFYRRRFVTGIVTRGFAKAEYNSYVSEYRLEFLSMSYTWRSVLNDSG NVKIFPGNINWDTAKINYLPRPLRAAVFGGYEPINAQYLPPFNTCPAAKFIENIRHLYLKKYWEIAVLKILYEEKQIQAE KDRVTLQMEMNSTVEQLQRRNDRLYGLVDQTKVNHMRLPVSKWRTFWIYTKSKKEETSLKLMKREITIFARDETKTNNFT RSWIDYKIGFGSVPENYWIGNAIMHELTKDRPSEVYFKLTDDKNITKWAKYQNFTIGPEEEQFILNVNDTSYEGTAGDAL IYGKHNAWSVNGMAFSTYDMDNDRHKKYKCAADGGWWMNKCGVSPLTLTAMWWVESRRSVHVKPRDDLKKVAMMIRF |
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