Gene
| Gene Model ID | pfu_aug2.0_116.1_20279 |
|---|---|
| Locus | scaffold116.1 : 475248 ... 478405 : - |
| To GenomeBrowser | scaffold116.1:475248..478405 |
| Genes list of scaffold | scaffold116.1 |
| Synonym | pfu_aug1.0_202627.1_42985 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_116.1_20279.t1 | 1 | 1 | DEAD | 2 | 174 | 1.1e-10 | 41.2 | 4.2e-14 | 2.1e-10 | 40.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_116.1_20279.t1 | gi|260787811|ref|XP_002588945.1| | hypothetical protein BRAFLDRAFT_89135 [Branchiostoma floridae] | 3.0e-31 |
| pfu_aug2.0_116.1_20279.t1 | gi|585642794|ref|XP_006811244.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 34-like [Saccoglossus kowalevskii] | 5.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_116.1_20279.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20279.t1 atgatcgaagcaattttggagaagagggatgttttagccgttctacccacaggatatggcaagtctttgccttaccaaat gcacgttcctctaaggagaaagctctccggcgatgattatcggaagcaaagtgggatgcatgataaacttaacgagccaa aagtcagcgtatgctcgcctttgcttgcattaatgggagaccaagtcaataaattgaatggagttccagaaatacggcat atcactaatgatgatgataagctgaggaatgggcaatttgattacatgtttggttcgccagaactttttgttggaagtaa caaatggagggagatgatacgggagagtgccaatgacctcattgtaattgatgaattccataccattgctacttggggtg aaaaagaaagagatggtaaagaggcattccggaagtggtttggctttgttggagggttgcggtccttgctccccagtgca actgtacttgcacttagtgctacgtgtacaaaccaagtgaaaagacgtgtaatgaaagccttagcattaaaaccagaaac tttacaaattgcaatttctccaaatagaccatatataaaattgacagtagaaaggatttcgaaggacatttctttcggtt tctcgtggatagtagatgctttgtcatcaggaacttttccaaaaacattattgtattgtacatctattaatgactgttcg aaattatattcttatctnccgtataaccagaaattttcgcgatatactaattttcgctatattagcgagtga |
|
Protein
| Protein ID | pfu_aug2.0_116.1_20279.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_116.1_20279.t1 MIEAILEKRDVLAVLPTGYGKSLPYQMHVPLRRKLSGDDYRKQSGMHDKLNEPKVSVCSPLLALMGDQVNKLNGVPEIRH ITNDDDKLRNGQFDYMFGSPELFVGSNKWREMIRESANDLIVIDEFHTIATWGEKERDGKEAFRKWFGFVGGLRSLLPSA TVLALSATCTNQVKRRVMKALALKPETLQIAISPNRPYIKLTVERISKDISFGFSWIVDALSSGTFPKTLLYCTSINDCS KLYSYXPYNQKFSRYTNFRYISE |
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