Gene
| Gene Model ID | pfu_aug2.0_1165.1_18144 |
|---|---|
| Locus | scaffold1165.1 : 116546 ... 123595 : - |
| To GenomeBrowser | scaffold1165.1:116546..123595 |
| Genes list of scaffold | scaffold1165.1 |
| Synonym | pfu_aug1.0_3900.1_52124 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| starry isoform e | GO:0004871 GO:0007389 GO:0007409 GO:0009968 GO:0016020 GO:0016055 GO:0016358 GO:0022603 GO:0042067 GO:0048056 GO:0051128 GO:0051960 GO:0065008 GO:0098742 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1165.1_18144.t1 | 5 | 1 | Cadherin | 55 | 69 | 8.39938e-42 | 141.3 | 0.89 | 4400.0 | -2.0 |
| pfu_aug2.0_1165.1_18144.t1 | 5 | 2 | Cadherin | 98 | 154 | 8.39938e-42 | 141.3 | 1.8e-06 | 0.0089 | 16.2 |
| pfu_aug2.0_1165.1_18144.t1 | 5 | 3 | Cadherin | 170 | 260 | 8.39938e-42 | 141.3 | 2.3e-25 | 1.2e-21 | 76.7 |
| pfu_aug2.0_1165.1_18144.t1 | 5 | 4 | Cadherin | 274 | 349 | 8.39938e-42 | 141.3 | 8.5e-09 | 4.2e-05 | 23.7 |
| pfu_aug2.0_1165.1_18144.t1 | 5 | 5 | Cadherin | 357 | 397 | 8.39938e-42 | 141.3 | 3.3e-08 | 0.00016 | 21.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1165.1_18144.t1 | gi|260809723|ref|XP_002599654.1| | hypothetical protein BRAFLDRAFT_205652 [Branchiostoma floridae] | 1.00053e-42 |
| pfu_aug2.0_1165.1_18144.t1 | gi|195582246|ref|XP_002080939.1| | GD10750 [Drosophila simulans] | 8.00001e-42 |
| pfu_aug2.0_1165.1_18144.t1 | gi|386767716|ref|NP_001246258.1| | starry night, isoform E [Drosophila melanogaster] | 8.00001e-42 |
| pfu_aug2.0_1165.1_18144.t1 | gi|195333203|ref|XP_002033281.1| | GM21230 [Drosophila sechellia] | 8.00001e-42 |
Transcript
| Transcript ID | pfu_aug2.0_1165.1_18144.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1165.1_18144.t1 atggaatttaaaggaaatctatcttcatggtccatccttataccagtattatgtatgtcgatttattcatatgttcagag tgctccatttctcaaaaatcctgttcgaaacgaagtgtatgagaaattcagaatagcagtagaggaaacattgcatcatg tgtataatgcatcagtgatggaagaacagaattcgggactacctgtaacagaaccattattccctccggtactttttgga gaactggatgcgaatatatcttttctgagagtatcgatggcaatctctgggagcactgtttttacactggatagtagctc aggacaagtgattgctaaaacgaaactggatagagagcttctgaatcactattccctgatggcaagggcaacctacgaaa ccgttcatgaaagtgaagttagatatcgattttcctcaataacatacgttgaaattaaggttcttgatgtcaatgataac agtccagattttgtgggcgatgttatgtcctgtagtgttccagaaaacaaaattgtaggctcacaaatttccaatcttac tgcaacagatatggatgaggggtttaacaaagaaatagagtatgaaatagctgatggcaatcatgaaggagtttttgcta ttgatgaattctctggtgttgtaacattgcaaaaaccgttagatttcgagaagacgcagcgatttgaactttcagtgatg gcgcacgacagaggtaatccatctctaagtagcacagcgaatatcaccgttgacatacttgatgtaaatgacaacaaacc tgaatttgaattttcaagttaccatggaaacatatctgaacacgttgaaattaatgaaactatattaagtattagggcac aagatgcggacagtggaattaacaaagagttggaatatttcatagtgcattctgataaagatattccattttatatgtca aatggcgatattaaggttgaaagaggaattgaaaggcaaaatcatggtcacgttttgtacaattttgatgttatagtaca cgacaaggattttgtagacgatgctatgtcctgtagtgttccagaaaacgaaattgtaggctcacaagttttcaatctta cagcaactgacatggatgaatggtttaacaaagaaatagagtatgaaatagccaatggtgatcctgaaggcattttgcca ttgatgcagtttttggtcttgtaa |
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Protein
| Protein ID | pfu_aug2.0_1165.1_18144.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1165.1_18144.t1 MEFKGNLSSWSILIPVLCMSIYSYVQSAPFLKNPVRNEVYEKFRIAVEETLHHVYNASVMEEQNSGLPVTEPLFPPVLFG ELDANISFLRVSMAISGSTVFTLDSSSGQVIAKTKLDRELLNHYSLMARATYETVHESEVRYRFSSITYVEIKVLDVNDN SPDFVGDVMSCSVPENKIVGSQISNLTATDMDEGFNKEIEYEIADGNHEGVFAIDEFSGVVTLQKPLDFEKTQRFELSVM AHDRGNPSLSSTANITVDILDVNDNKPEFEFSSYHGNISEHVEINETILSIRAQDADSGINKELEYFIVHSDKDIPFYMS NGDIKVERGIERQNHGHVLYNFDVIVHDKDFVDDAMSCSVPENEIVGSQVFNLTATDMDEWFNKEIEYEIANGDPEGILP LMQFLVL |
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