Gene
| Gene Model ID | pfu_aug2.0_1166.1_21448 |
|---|---|
| Locus | scaffold1166.1 : 157803 ... 163975 : - |
| To GenomeBrowser | scaffold1166.1:157803..163975 |
| Genes list of scaffold | scaffold1166.1 |
| Synonym | pfu_aug1.0_15863.1_10863 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear hormone receptor e75-like | GO:0003707 GO:0004887 GO:0005634 GO:0006355 GO:0008270 GO:0030522 GO:0043401 GO:0043565 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1166.1_21448.t1 | 1 | 1 | zf-C4 | 304 | 372 | 1.5e-28 | 98.8 | 2.8e-32 | 4.2e-28 | 97.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1166.1_21448.t1 | gi|676438219|ref|XP_009048458.1| | hypothetical protein LOTGIDRAFT_238472 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1166.1_21448.t1 | gi|524897443|ref|XP_005105182.1| | PREDICTED: flocculation protein FLO11-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1166.1_21448.t1 | gi|685523471|ref|XP_009198469.1| | PREDICTED: peroxisome proliferator-activated receptor gamma [Papio anubis] | 1.99993e-41 |
| pfu_aug2.0_1166.1_21448.t1 | gi|390334917|ref|XP_785820.2| | PREDICTED: nuclear receptor subfamily 1 group D member 1 [Strongylocentrotus purpuratus] | 3.00004e-41 |
| pfu_aug2.0_1166.1_21448.t1 | gi|241106442|ref|XP_002410049.1| | nuclear receptor, putative [Ixodes scapularis] | 4.00001e-40 |
Transcript
| Transcript ID | pfu_aug2.0_1166.1_21448.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1166.1_21448.t1 atggttcttgcgacgtcggacgaagagaactgcgtcgtcccaatgacggcacaacccgacgacggcgtaaataataacaa taataacaacgtcggttcacagctgttgaaggcggcattactgaaacccttacatgaattacaaaaccaaatgtcggaca atttacttaagggaaatgacaaatgtacagaacagtgtcacctaaaatctgaaacacagaatgatctcgtgatggttgaa ccacagaatgccccttcacatgtacccgtttccgttcctacaggccccatgaaggaaaactcaaccgaatgtaacgcaca aaaatcatctgttaacgaaaatgtagggaaaagagtttaccaggataagccagaagaagcagacgttacaaacggacaaa aatttcaatcacacgatcaatcaacagtcgttcacgaggacatggaggtagcaacgaataactcacgtgatcaagatgtt gatgacgtcattcttgtcagtttccaacccccgacaactgtaacaaattcagacacctatattccgttacagagtagaaa tgctcatgcattcaaccttaatcctgtttactcgactgaaaatcagctacacaaacaatcgagccctctttcaagtgcat tcgacggtcacgtatgttcaaatggtatacgaagtggcagtgagtcgggtagctctctgaatagtagtgacgtcaacagt ccgtcatcgctcaacaacgaatctccacaaagttataacaatggatctccatttaacggaagtgatgtcatgccgtctgc acctccgatgatgtcatatccggtcgatgtcagcagcacaagcagaccaccaaaaccaaaaagacggattaagccgcaag accggatttgcacagctgatggccatattctgtgtagagtgtgtggagataaagcatccggcttccactatggtgtgttc tcttgtgagggctgcaaaggtttcttccgacggacggtgagacagaagcttgtatataaaccatgtgacaataccaaagg ttgtttgatcatgcgtatcagcaggaacaggtgtcaatattgcagaatgcagagatgtatctccgcaggaatgtctcatg aagctgtccgtctaggaaggtgtccaaagaaagataagccaaagcgacttgacttcttcaaacttccaaagaatcaacaa ggcacagtggacgttgataagcagataaagtcagaacagatggttctcaatattcataattcattccgcatggcactgaa tggtgatgcctgtgatctactcagtcatatgcgggatacatgttttagcgggattcatattttagcagacatcattttag ataagataaatttacagcatggaccagacatgcatgtttcggatcgagaaaacattcaacacgccaaggtgatggaagga ttggaagatgaactcagccaagctctccgatgtcaacttctgctgaatcataaagagaaagctctgatgtttccaaagtt agtggaggtgatagtagatatacgagctatatctaccacattccttgaggacattatgatggcacaagtggaagtcagtg actga |
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Protein
| Protein ID | pfu_aug2.0_1166.1_21448.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1166.1_21448.t1 MVLATSDEENCVVPMTAQPDDGVNNNNNNNVGSQLLKAALLKPLHELQNQMSDNLLKGNDKCTEQCHLKSETQNDLVMVE PQNAPSHVPVSVPTGPMKENSTECNAQKSSVNENVGKRVYQDKPEEADVTNGQKFQSHDQSTVVHEDMEVATNNSRDQDV DDVILVSFQPPTTVTNSDTYIPLQSRNAHAFNLNPVYSTENQLHKQSSPLSSAFDGHVCSNGIRSGSESGSSLNSSDVNS PSSLNNESPQSYNNGSPFNGSDVMPSAPPMMSYPVDVSSTSRPPKPKRRIKPQDRICTADGHILCRVCGDKASGFHYGVF SCEGCKGFFRRTVRQKLVYKPCDNTKGCLIMRISRNRCQYCRMQRCISAGMSHEAVRLGRCPKKDKPKRLDFFKLPKNQQ GTVDVDKQIKSEQMVLNIHNSFRMALNGDACDLLSHMRDTCFSGIHILADIILDKINLQHGPDMHVSDRENIQHAKVMEG LEDELSQALRCQLLLNHKEKALMFPKLVEVIVDIRAISTTFLEDIMMAQVEVSD |
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