Gene
| Gene Model ID | pfu_aug2.0_1167.1_24737 |
|---|---|
| Locus | scaffold1167.1 : 46816 ... 53899 : + |
| To GenomeBrowser | scaffold1167.1:46816..53899 |
| Genes list of scaffold | scaffold1167.1 |
| Synonym | pfu_aug1.0_3587.1_08665 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1167.1_24737.t1 | 2 | 1 | TPR_11 | 87 | 154 | 7.4e-15 | 54.3 | 5.8e-17 | 1.2e-13 | 50.4 |
| pfu_aug2.0_1167.1_24737.t1 | 3 | 1 | TPR_1 | 88 | 116 | 1.7e-08 | 33.7 | 6.3e-06 | 0.013 | 15.0 |
| pfu_aug2.0_1167.1_24737.t1 | 3 | 2 | TPR_1 | 126 | 152 | 1.7e-08 | 33.7 | 5.3e-05 | 0.11 | 12.1 |
| pfu_aug2.0_1167.1_24737.t1 | 2 | 2 | TPR_11 | 167 | 194 | 7.4e-15 | 54.3 | 0.043 | 91.0 | 2.8 |
| pfu_aug2.0_1167.1_24737.t1 | 3 | 3 | TPR_1 | 167 | 193 | 1.7e-08 | 33.7 | 0.00035 | 0.75 | 9.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1167.1_24737.t1 | gi|524882602|ref|XP_005097943.1| | PREDICTED: tetratricopeptide repeat protein 4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1167.1_24737.t1 | gi|676420705|ref|XP_009043706.1| | hypothetical protein LOTGIDRAFT_102857, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1167.1_24737.t1 | gi|557009112|ref|XP_006005554.1| | PREDICTED: tetratricopeptide repeat protein 4-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1167.1_24737.t1 | gi|744578064|ref|XP_010982891.1| | PREDICTED: tetratricopeptide repeat protein 4 [Camelus dromedarius] | 0.0 |
| pfu_aug2.0_1167.1_24737.t1 | gi|560956212|ref|XP_006200590.1| | PREDICTED: tetratricopeptide repeat protein 4 [Vicugna pacos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1167.1_24737.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1167.1_24737.t1 atggcagcgaagagattaccaaacgagacaaacgaggagatgactaggagactgaacagagaattggagcagtttataga ggagaaggcagctgaagctgcagagagaagagcaaataatcctgaaaaatatgatgcctttatgaaagatatcgagaacc acccagcttttatgacggaaattgaccctagcaaacctcttaactctgaaatggaaggtctaatgagactgaagtatgag acagagaatccaataggtagggctgaggcctacaaagatgacggaaacaatgaattcaaaaagaagcggtatgatattgc tatcgacaattatacagaggcaatcaagtgcaaatgtcctgacaaagaattgaatgccatactttattctaatagagccg ctgcacaatttcatagaggtaattatctctctgccctgagagactgtataatggcaaggaagttcaaagctgaccatctg aaagctatactcaaaggtgcccagtgctgcatggagatgaagaaatacaaggatgctggtcagtggtgtgactcaggact aattattgaaccaaaaaatgaaaagtttctggagatgaaaacaaagtcggacaaactccatcgagcacaggaaagagata aacgtagagaggagatgaaagaaagaaaagacaacgaggaagagaagaaactgctacaaactatacagagtcgaggcata aggctagcaggaatgaagcaatcacagaaagataagaaactggatcctctactgttaacaaatctggaggtacacaatcc aagcggagcaaaagtccacgctgacactgacggaacgttacactggcctgtgttattactctatccagagtacacacagt ctgattacatagaggacttcaatgagcatcaaaggaaagtataa |
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Protein
| Protein ID | pfu_aug2.0_1167.1_24737.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1167.1_24737.t1 MAAKRLPNETNEEMTRRLNRELEQFIEEKAAEAAERRANNPEKYDAFMKDIENHPAFMTEIDPSKPLNSEMEGLMRLKYE TENPIGRAEAYKDDGNNEFKKKRYDIAIDNYTEAIKCKCPDKELNAILYSNRAAAQFHRGNYLSALRDCIMARKFKADHL KAILKGAQCCMEMKKYKDAGQWCDSGLIIEPKNEKFLEMKTKSDKLHRAQERDKRREEMKERKDNEEEKKLLQTIQSRGI RLAGMKQSQKDKKLDPLLLTNLEVHNPSGAKVHADTDGTLHWPVLLLYPEYTQSDYIEDFNEHQRKV |
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