Gene
| Gene Model ID | pfu_aug2.0_1168.1_28102 |
|---|---|
| Locus | scaffold1168.1 : 10746 ... 20338 : + |
| To GenomeBrowser | scaffold1168.1:10746..20338 |
| Genes list of scaffold | scaffold1168.1 |
| Synonym | pfu_aug1.0_2178.1_44262 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1168.1_28102.t1 | 2 | 1 | VWA | 19 | 187 | 0.0 | 219.1 | 3.80004e-41 | 6.2e-38 | 130.2 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 1 | VWA_2 | 19 | 179 | 2.2e-30 | 106.0 | 4.2e-20 | 6.9e-17 | 62.0 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 1 | VWA_3 | 19 | 164 | 2.3e-11 | 43.6 | 3.6e-10 | 6.0e-07 | 29.2 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 1 | vWA-TerF-like | 19 | 173 | 5.3e-06 | 26.4 | 6.0e-06 | 0.0098 | 15.7 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 2 | VWA | 222 | 367 | 0.0 | 219.1 | 6.3e-30 | 1.0e-26 | 93.7 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 2 | VWA_2 | 237 | 360 | 2.2e-30 | 106.0 | 1.1e-15 | 1.8e-12 | 47.7 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 2 | VWA_3 | 237 | 344 | 2.3e-11 | 43.6 | 5.1e-05 | 0.084 | 12.5 |
| pfu_aug2.0_1168.1_28102.t1 | 2 | 2 | vWA-TerF-like | 237 | 353 | 5.3e-06 | 26.4 | 0.00045 | 0.74 | 9.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1168.1_28102.t1 | gi|583996875|ref|XP_006793544.1| | PREDICTED: collagen alpha-1(XII) chain-like [Neolamprologus brichardi] | 4.0e-39 |
| pfu_aug2.0_1168.1_28102.t1 | gi|499020658|ref|XP_004561110.1| | PREDICTED: collagen alpha-1(XII) chain-like [Maylandia zebra] | 7.0e-39 |
Transcript
| Transcript ID | pfu_aug2.0_1168.1_28102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1168.1_28102.t1 atgagtaacaaattccctttgaaagacgatcaaatctcagaaatattcatgacagatgttgtattcgtggtggacacctc aggtagtattactgacagccaatttacagacgtggtagactttatatacaatgtgacgtcttatttatccataggaacca ctgcgttccaagtatcggtggtcacattcgcatctgacgtcacggagcgatttccactgaatacatacagcgataagacg agccttctaacggccatacaaggcctgaaaagcatttcaccatctggaggaacattcacctttgacgccctaaactacac tacccaaaatacctttcaaacgtccaatggagcaagatacacagctgagaaatcggctgttgtcattacggacggccaaa gtgccaatcaaattcagacagcggccgcggccgacgagctacgtggccttggagtggagatatttgtggttggaatcggc gacctgtcatcgttatctttgacggaactgaatgctatatcaaatgatccagattcctattacgtatctcagatttcaga ttttatatatctctgtagcctgcttccttcactcagctataaactcggtatgttaaaaaaaagagacaaccacattataa aagtcagtgtcaaaaataaattgaataaaataacatttactnatttatccataggaaccactgcgttccaagtatcggtg gtcacattcgcatctgacgtcacggagcgatttccactgaatacatacagcgataagacgagccttctaacggccataca aggcctgaaaagcatttcaccatctggaggaacattcacctttgacgccctaaactacactacccaaaatacctttcaaa cgtccaatggagcacgatacacagctgagaaatcggctgttgtcattacggacggccaaagtgccaatcaaattcagaca gcggccgcggccgacgagctacgtggccttggagtggagatatttgtggttggaatcggcgacctgtcatcgttatcttt gacggaactgaatgctatatcaaatgatccagattcctattacgtatctcagatttcagattttatatatctctgtagcc tgcttccttcactcagctataaactcgacaatacaacatctgtggccttagctagtggctgttatgaggagaccaccacc actaccacatttattgacaagaaagcaactacaaccgccactactactactacaaggttgacaggcttacacagctcaag tcgcatccatggcgtgaaataa |
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Protein
| Protein ID | pfu_aug2.0_1168.1_28102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1168.1_28102.t1 MSNKFPLKDDQISEIFMTDVVFVVDTSGSITDSQFTDVVDFIYNVTSYLSIGTTAFQVSVVTFASDVTERFPLNTYSDKT SLLTAIQGLKSISPSGGTFTFDALNYTTQNTFQTSNGARYTAEKSAVVITDGQSANQIQTAAAADELRGLGVEIFVVGIG DLSSLSLTELNAISNDPDSYYVSQISDFIYLCSLLPSLSYKLGMLKKRDNHIIKVSVKNKLNKITFTXLSIGTTAFQVSV VTFASDVTERFPLNTYSDKTSLLTAIQGLKSISPSGGTFTFDALNYTTQNTFQTSNGARYTAEKSAVVITDGQSANQIQT AAAADELRGLGVEIFVVGIGDLSSLSLTELNAISNDPDSYYVSQISDFIYLCSLLPSLSYKLDNTTSVALASGCYEETTT TTTFIDKKATTTATTTTTRLTGLHSSSRIHGVK |
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