Gene
| Gene Model ID | pfu_aug2.0_1168.1_28105 |
|---|---|
| Locus | scaffold1168.1 : 144276 ... 168853 : + |
| To GenomeBrowser | scaffold1168.1:144276..168853 |
| Genes list of scaffold | scaffold1168.1 |
| Synonym | pfu_aug1.0_39991.1_05104 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1168.1_28105.t1 | 1 | 1 | HLH | 59 | 110 | 6.4e-14 | 51.3 | 5.8e-17 | 1.2e-13 | 50.4 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 1 | PAS | 136 | 237 | 4.8e-24 | 84.3 | 1.3e-16 | 2.7e-13 | 49.6 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 1 | PAS_9 | 148 | 196 | 6.8e-10 | 39.2 | 0.006 | 13.0 | 6.2 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 1 | PAS_11 | 153 | 203 | 2.4e-33 | 114.3 | 1.6e-07 | 0.00035 | 20.5 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 1 | PAS_3 | 156 | 209 | 1.1e-22 | 79.9 | 1.0e-07 | 0.00022 | 21.2 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 2 | PAS_11 | 327 | 430 | 2.4e-33 | 114.3 | 1.4e-29 | 3.0e-26 | 91.5 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 2 | PAS | 335 | 415 | 4.8e-24 | 84.3 | 3.0e-11 | 6.3e-08 | 32.3 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 2 | PAS_9 | 336 | 426 | 6.8e-10 | 39.2 | 2.1e-10 | 4.4e-07 | 30.2 |
| pfu_aug2.0_1168.1_28105.t1 | 2 | 2 | PAS_3 | 340 | 426 | 1.1e-22 | 79.9 | 1.5e-18 | 3.2e-15 | 55.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1168.1_28105.t1 | gi|524880467|ref|XP_005096897.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator homolog [Aplysia californica] | 0.0 |
| pfu_aug2.0_1168.1_28105.t1 | gi|676479469|ref|XP_009061758.1| | hypothetical protein LOTGIDRAFT_179263 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1168.1_28105.t1 | gi|642910441|ref|XP_008190739.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator homolog isoform X11 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_1168.1_28105.t1 | gi|642910435|ref|XP_008190735.1| | PREDICTED: aryl hydrocarbon receptor nuclear translocator homolog isoform X8 [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_1168.1_28105.t1 | gi|242021051|ref|XP_002430960.1| | conserved hypothetical protein [Pediculus humanus corporis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1168.1_28105.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1168.1_28105.t1 atgtcctcgtccgctacagtatctccaggaccatctggggcaggtacaccagacagtagtggtaaaggtggtaatcgtaa gaggaaaggagggtcaggaagggattctgaagatgaggacagtcaacagggaggaagctacagccaggaacaggctgata aggaaagatttgccagggagagtcattgtgagattgagagacgtaggaggaataagatgacgacctacattaatgagctg tgtgatatggtacccacatgcagtacgttggcacggaaaccagataaactgaccatactcagaatggccgtatcccacat gaagactttacgaggtacaggagctggaaatactagtgtagatgggtgttacaagccgtcatttcttaccgaccaagaac tcaaacatcttatattagaggccgccgatggatttctatttgtggtacagtgtgacacagggagaattatttatgtgtct gattccataacacctgtactacatcaaagtcagagtgattggtttgggaacaccttatatgaacttgtacacccagacga tgtggagaaagtcagggaacaactatctactacagaatcacagaatactggcagaatccttgatctcaaaaccggcacag tgaagaaagatagtcatcaaacgtctattcgtctttgtatgggttctagacgagggtttatatgccgtatgaagatgggt aacgttcaggtagatcccatgacagccaatcacagcctgagaatcaggaaccgtaacacactgggaccatcaagtgacgg aaaccattacagtgtagtacatgtgacaggatacatcaaaaactggcctccttcaggtgttcagatggagagagaagcag atgagaatgctgggagtcactgttgccttgtgggtataggtcgtctacaggtcactagcactcctaactgtaacgatatg atgggtcctaacggagcatcagagtttatatccaggcacagcattgatggaaaatttacctttgttgatcaaagagtatc accagtactaggatatcaaccccaggagctcctaggcaaatcagccttcgacttctatcacccggaagataaaaatatat taaaagaaacttttgaccaagttctcaagctgaaaggccaagtgatgtccatgatgtacagatttagagcgtctaatcac gagtacgtctggctgcgtactagtagttttagctttcagaatccctataccgatgaagtagagtatattgtatgtaccaa cacctcagcaaagagtgtacaacaaggatctggagcttcctcaggtactttgacctctgacccccaaccacaggacccta acgtacctatgtcctcctacaacacaaaccgtcctctacaaaatgacatgggaatgccgggcaccagtaaaccaccagag ttcagggactcctacagtcaccaggactatagtgcagttctcacaggacaacgtccagtaggtagacctgaaatgtacaa ctttaactctaatcctgctcatatcaagtatccccaacaaagtgtagccaataatatccctgtatcacaaactactgtag ctggggtacggaggagcccaaacccagcaggctgggcaggacaaggagcttataaccaaggacagggtggtggagacttt gcctcaaatcctgcctctggatattcacagattagtcctaacagttcatctccagcaggaggtcctacttacacacagtt aggtggatcccagaatccacagggtaacttcgcccatgcttctcccggtggatctggccagcccatgtgggctccacagt ggcagggtggggcagctgaagcccagcagaacccccagggtcaacaggtacagtctgccccaccccctcaacctggcaca cagcaacaacagaacgaggagttcagtgacatgttcagaatgttagaacctgatatttcagggatgttcaatactttccc tgaatga |
|
Protein
| Protein ID | pfu_aug2.0_1168.1_28105.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1168.1_28105.t1 MSSSATVSPGPSGAGTPDSSGKGGNRKRKGGSGRDSEDEDSQQGGSYSQEQADKERFARESHCEIERRRRNKMTTYINEL CDMVPTCSTLARKPDKLTILRMAVSHMKTLRGTGAGNTSVDGCYKPSFLTDQELKHLILEAADGFLFVVQCDTGRIIYVS DSITPVLHQSQSDWFGNTLYELVHPDDVEKVREQLSTTESQNTGRILDLKTGTVKKDSHQTSIRLCMGSRRGFICRMKMG NVQVDPMTANHSLRIRNRNTLGPSSDGNHYSVVHVTGYIKNWPPSGVQMEREADENAGSHCCLVGIGRLQVTSTPNCNDM MGPNGASEFISRHSIDGKFTFVDQRVSPVLGYQPQELLGKSAFDFYHPEDKNILKETFDQVLKLKGQVMSMMYRFRASNH EYVWLRTSSFSFQNPYTDEVEYIVCTNTSAKSVQQGSGASSGTLTSDPQPQDPNVPMSSYNTNRPLQNDMGMPGTSKPPE FRDSYSHQDYSAVLTGQRPVGRPEMYNFNSNPAHIKYPQQSVANNIPVSQTTVAGVRRSPNPAGWAGQGAYNQGQGGGDF ASNPASGYSQISPNSSSPAGGPTYTQLGGSQNPQGNFAHASPGGSGQPMWAPQWQGGAAEAQQNPQGQQVQSAPPPQPGT QQQQNEEFSDMFRMLEPDISGMFNTFPE |
|