Gene
| Gene Model ID | pfu_aug2.0_1177.1_24748 |
|---|---|
| Locus | scaffold1177.1 : 100076 ... 120688 : + |
| To GenomeBrowser | scaffold1177.1:100076..120688 |
| Genes list of scaffold | scaffold1177.1 |
| Synonym | pfu_aug1.0_7170.1_17062 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| catenin alpha-2-like isoform x3 | GO:0005198 GO:0005739 GO:0007155 GO:0015031 GO:0015629 GO:0045296 GO:0046872 GO:0051015 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1177.1_24748.t1 | 3 | 1 | Vinculin | 53 | 211 | 0.0 | 812.8 | 0.0 | 0.0 | 165.5 |
| pfu_aug2.0_1177.1_24748.t1 | 3 | 2 | Vinculin | 214 | 256 | 0.0 | 812.8 | 7.1e-12 | 2.1e-08 | 32.7 |
| pfu_aug2.0_1177.1_24748.t1 | 3 | 3 | Vinculin | 260 | 769 | 0.0 | 812.8 | 0.0 | 0.0 | 618.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1177.1_24748.t1 | gi|573882061|ref|XP_006629218.1| | PREDICTED: catenin alpha-2-like isoform X3 [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1177.1_24748.t1 | gi|505837002|ref|XP_004612071.1| | PREDICTED: catenin alpha-2 [Sorex araneus] | 0.0 |
| pfu_aug2.0_1177.1_24748.t1 | gi|226823293|ref|NP_001152844.1| | catenin alpha-2 [Danio rerio] | 0.0 |
| pfu_aug2.0_1177.1_24748.t1 | gi|524880426|ref|XP_005096877.1| | PREDICTED: catenin alpha-2-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1177.1_24748.t1 | gi|676462633|ref|XP_009056332.1| | hypothetical protein LOTGIDRAFT_178587 [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1177.1_24748.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1177.1_24748.t1 atggaatcctattatttagcatacggaaagacttcatttttgaaacagagttttaacagaggaagttcggaccgaagtac cgacgaatctgcctgttcaccagtggcagatccagaaccccaactgccgggggtggcacatatatctcttttaatggtga caactcttgtgaatcagaaaagtccatcaaataaaaagaaaggacgctcaaagaaagcccatgtccttagtgctgccgta cagaaggctacagagaattttattgctcgaggagaggagatcgcccatgaaaatcctgacgtaaaagctgacatgatggc agccgtagatgaagtcagaaaaacaggagaagtcatgagggaggcatccacggagtttgctgctgatccctgttcactga caaagcgaggggcgatggtgagagccgctagagccctgctatctgccgtcacacgtctgttaatcctggccgatatggtc gatgtccatctactgatgaaatcattgaggatggtggaaggggacttggatagagttaaaaatgcgaccagtcaacagga gctaatgaatagcttcaaggatttaggagaaagcttagtagatctggctaacaaagctgcacaaagacaaaatcaaaaaa ttatcatggatcctcttacatacaatgaagtaaggaccagaccctcgctagaagagagacttgaaagcattattagtgga gctgcattaatggcggactcctcgtgtacaagggacgatagacgagagaaaatcgttcaagagtgtaatgcagtgagaca ggcactacaagatctactgacagaatacatgaacaatgcggggaagagtgagcctagccaagcattggagaatgctatag acaacatgcagaaaaaaacaaaagatctacgcagacagttgaggaaggctgtggtggaccatgtatcggattcattctta gagaccaatgtccccctcctggttctgatcgaggcagccaaggcaggggatgaaaagggtgtggaagaatacgcccaagt ctttgctgaccatgctagtaaactggtggaggtggccaacctagcatgttccatgtcgacaaacgaggaaggtgtgaaga tggttaggatggcggcagctgaactagagaggctatgtccacaggtaatcaatgcagccagagtgcttgcctcaaggcca aggtccaaggtggcacaggagaacatggacgtatttaaggatgcttgggagagggaggtcagacttctgacagaggctgt ggatgatattaccaccatagaagacttcctggctgtatcagagagccatattcttgaagatgtaaacaaatgtgtgatgg cgctccaggaaggtgatgccgacactttggatcgtacggcaggtgccattcgaggacgatcgtctcgtgtttgtaacgta gtaggagcagaaatggacaactatgaaccaggaccttatgtcgacagggtcatggatgctgtagtaatgttaagggacca agttatgccaaattttgctgagaaggttgagatagctgttgatgctttgagttgtaacccacctagagaagttgatgaga atgagtttattgatgcgagtcgacttgctgagatagagacagattctgaagttgaggatcagtatgagactggtagtaaa tcgagttaccatactggtgccgatgaagattttggtaagagtgatcgagccatgatgagacagctgccggcagaggaaag ggagaaaatccagatgcaggtctcagagttcctgcaggataaggccaaacttgacagagaagtagccaagtgggacgata gcggtaatgacatcatcgttatggccaaacagatgtgtatgatcatgatggagatgacagactttacaaggggtcgcgga ccattaaaaagtactatggatgttatcaacgcagctaagaaaatctccgaggctggtaccaagctggatcgcatagcaaa agaaatagcagatcagtgtcccgactctgcttccaaaaaagatttgctggcctacttacaaagaattgctttgtattgtc atcaactgaacatcacaagcaaggtcaaggctgacgtacagagtgttagcggagaactgatcgtatcggggttggacagt gctacttcccttatccaagcggctaaaaacttgatgaacgctgtggtactgactgtcaaagcttgttatgtagcatccac caagtacaaagttgcagggaagaaatccactgtcgttatgtggaaaatgaagcccccagagaagaaggcactagtgaaga gagaagatccaaacgaactaagatcaaaaatacgcaagagtgcacacaagaagagaatcgagcccgtgaaagcactcagt gaattccaggaagtggatagcttctgttag |
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Protein
| Protein ID | pfu_aug2.0_1177.1_24748.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1177.1_24748.t1 MESYYLAYGKTSFLKQSFNRGSSDRSTDESACSPVADPEPQLPGVAHISLLMVTTLVNQKSPSNKKKGRSKKAHVLSAAV QKATENFIARGEEIAHENPDVKADMMAAVDEVRKTGEVMREASTEFAADPCSLTKRGAMVRAARALLSAVTRLLILADMV DVHLLMKSLRMVEGDLDRVKNATSQQELMNSFKDLGESLVDLANKAAQRQNQKIIMDPLTYNEVRTRPSLEERLESIISG AALMADSSCTRDDRREKIVQECNAVRQALQDLLTEYMNNAGKSEPSQALENAIDNMQKKTKDLRRQLRKAVVDHVSDSFL ETNVPLLVLIEAAKAGDEKGVEEYAQVFADHASKLVEVANLACSMSTNEEGVKMVRMAAAELERLCPQVINAARVLASRP RSKVAQENMDVFKDAWEREVRLLTEAVDDITTIEDFLAVSESHILEDVNKCVMALQEGDADTLDRTAGAIRGRSSRVCNV VGAEMDNYEPGPYVDRVMDAVVMLRDQVMPNFAEKVEIAVDALSCNPPREVDENEFIDASRLAEIETDSEVEDQYETGSK SSYHTGADEDFGKSDRAMMRQLPAEEREKIQMQVSEFLQDKAKLDREVAKWDDSGNDIIVMAKQMCMIMMEMTDFTRGRG PLKSTMDVINAAKKISEAGTKLDRIAKEIADQCPDSASKKDLLAYLQRIALYCHQLNITSKVKADVQSVSGELIVSGLDS ATSLIQAAKNLMNAVVLTVKACYVASTKYKVAGKKSTVVMWKMKPPEKKALVKREDPNELRSKIRKSAHKKRIEPVKALS EFQEVDSFC |
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