Gene
| Gene Model ID | pfu_aug2.0_1190.1_01456 |
|---|---|
| Locus | scaffold1190.1 : 18527 ... 30755 : - |
| To GenomeBrowser | scaffold1190.1:18527..30755 |
| Genes list of scaffold | scaffold1190.1 |
| Synonym | pfu_aug1.0_2159.1_58802 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1190.1_01456.t1 | 5 | 1 | LRR_6 | 94 | 105 | 1.4e-09 | 36.9 | 0.013 | 37.0 | 4.8 |
| pfu_aug2.0_1190.1_01456.t1 | 3 | 1 | LRR_4 | 94 | 105 | 5.1e-07 | 29.1 | 0.034 | 100.0 | 2.6 |
| pfu_aug2.0_1190.1_01456.t1 | 5 | 2 | LRR_6 | 117 | 134 | 1.4e-09 | 36.9 | 0.00013 | 0.38 | 10.9 |
| pfu_aug2.0_1190.1_01456.t1 | 3 | 2 | LRR_4 | 117 | 157 | 5.1e-07 | 29.1 | 1.8e-08 | 5.3e-05 | 22.7 |
| pfu_aug2.0_1190.1_01456.t1 | 5 | 3 | LRR_6 | 143 | 160 | 1.4e-09 | 36.9 | 6.0e-06 | 0.018 | 15.0 |
| pfu_aug2.0_1190.1_01456.t1 | 5 | 4 | LRR_6 | 175 | 196 | 1.4e-09 | 36.9 | 0.086 | 260.0 | 2.2 |
| pfu_aug2.0_1190.1_01456.t1 | 3 | 3 | LRR_4 | 181 | 218 | 5.1e-07 | 29.1 | 0.01 | 30.0 | 4.3 |
| pfu_aug2.0_1190.1_01456.t1 | 5 | 5 | LRR_6 | 202 | 216 | 1.4e-09 | 36.9 | 5.0 | 15000.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1190.1_01456.t1 | gi|676424578|ref|XP_009044252.1| | hypothetical protein LOTGIDRAFT_152577 [Lottia gigantea] | 6.0e-38 |
| pfu_aug2.0_1190.1_01456.t1 | gi|390338706|ref|XP_003724827.1| | PREDICTED: leucine-rich repeat-containing protein 42 [Strongylocentrotus purpuratus] | 1.0e-37 |
| pfu_aug2.0_1190.1_01456.t1 | gi|677992264|ref|XP_009075714.1| | PREDICTED: leucine-rich repeat-containing protein 42 isoform X1 [Acanthisitta chloris] | 7.0e-36 |
| pfu_aug2.0_1190.1_01456.t1 | gi|706144189|ref|XP_010204404.1| | PREDICTED: leucine-rich repeat-containing protein 42 [Colius striatus] | 1.0e-35 |
| pfu_aug2.0_1190.1_01456.t1 | gi|699696895|ref|XP_009906337.1| | PREDICTED: leucine-rich repeat-containing protein 42 [Picoides pubescens] | 2.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_1190.1_01456.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1190.1_01456.t1 atgaagtcgacactcagggattcagacaatgaaaatgatccataccctcctgcaaaacgaaagaagataacatcatcatg ccgggttccatctttgatggagatagccattgactttgtagcttcaaatctgcaccatgtagaatcattctgtggttttc ctgatatagtgggacaggagatctttagaagagcagagctgatgaagagatttgacatatcaaatgatggagatgctaga tgcctgatactctttatcgatagttatggtgccctcgttttatctcagttgaacttatctggatgccatctgggtgttaa ttatgctcttgacaatttacttcatttcaagtccttggaagaattagatgtatcagcctgtgggttgggagatagtcatg aattcttaccctatattggtcacctagaaagtctgagaaaattgaacttgtccagtaatagcctaacagatgaaggaatg agaaaactaacaacaccatacagagtctgtggaaaaggaccaaagcatctggaaatctgtgatatctcagacaatccaac catcagcagtaaaagtattcagagactatccagtttccatgagctccacacagttgatgtcacaaaaactcaaataaaga gtgatgctgctttgttgaagcagtggcagttcaagcctataaagtcagattgcctccttgagatcagcaacaaaggatgg gccactggtgtggtcagtcagtggatgaagtttgctgaacagaaaatcgtcaaggaaacaaaaagagacagcaagtttta ttcaaaaacccacttaaagaaagatttcagcgttacatcagacaatatgaagtctgccccaggttatcgtctcctgctgg ttagatcatgcctacaatctgtgcaacctacgagtaataaccctgtacatcaaaactcacaatacagtgaagtgtctact aaaacaatgaggaaagaggaatcctgtgataataaaccttctccggtagttgaccctgatgatgaattgtttactatgta ctctgctgaaaatacccgaagtattgaagtcaatgacaaatcaaatgtttcaagtgcaagacggacaaaacgctgtaatg tttttaaagtaaacaaatcaagtgaattaccgcaaagtcattcaaacagttga |
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Protein
| Protein ID | pfu_aug2.0_1190.1_01456.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1190.1_01456.t1 MKSTLRDSDNENDPYPPAKRKKITSSCRVPSLMEIAIDFVASNLHHVESFCGFPDIVGQEIFRRAELMKRFDISNDGDAR CLILFIDSYGALVLSQLNLSGCHLGVNYALDNLLHFKSLEELDVSACGLGDSHEFLPYIGHLESLRKLNLSSNSLTDEGM RKLTTPYRVCGKGPKHLEICDISDNPTISSKSIQRLSSFHELHTVDVTKTQIKSDAALLKQWQFKPIKSDCLLEISNKGW ATGVVSQWMKFAEQKIVKETKRDSKFYSKTHLKKDFSVTSDNMKSAPGYRLLLVRSCLQSVQPTSNNPVHQNSQYSEVST KTMRKEESCDNKPSPVVDPDDELFTMYSAENTRSIEVNDKSNVSSARRTKRCNVFKVNKSSELPQSHSNS |
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