Gene
| Gene Model ID | pfu_aug2.0_1190.1_01458 |
|---|---|
| Locus | scaffold1190.1 : 70206 ... 81272 : + |
| To GenomeBrowser | scaffold1190.1:70206..81272 |
| Genes list of scaffold | scaffold1190.1 |
| Synonym | pfu_aug1.0_2159.1_58801 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1190.1_01458.t1 | 2 | 1 | Rhomboid | 431 | 496 | 9.6e-14 | 51.6 | 4.1e-17 | 3.0e-13 | 50.0 |
| pfu_aug2.0_1190.1_01458.t1 | 2 | 2 | Rhomboid | 510 | 533 | 9.6e-14 | 51.6 | 0.0087 | 64.0 | 3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1190.1_01458.t1 | gi|719734658|ref|XP_010223376.1| | PREDICTED: LOW QUALITY PROTEIN: inactive rhomboid protein 2 [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_1190.1_01458.t1 | gi|556968679|ref|XP_005993270.1| | PREDICTED: inactive rhomboid protein 2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1190.1_01458.t1 | gi|742179386|ref|XP_010887711.1| | PREDICTED: inactive rhomboid protein 2 isoform X2 [Esox lucius] | 0.0 |
| pfu_aug2.0_1190.1_01458.t1 | gi|742179379|ref|XP_010887710.1| | PREDICTED: inactive rhomboid protein 2 isoform X1 [Esox lucius] | 0.0 |
| pfu_aug2.0_1190.1_01458.t1 | gi|657572801|ref|XP_008290032.1| | PREDICTED: inactive rhomboid protein 2 [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1190.1_01458.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1190.1_01458.t1 atgttgaattgttttatagatgtgcctgattgcaagcagtccataacaatcacagtcatgagtggattactagaaaaagt gaagaaacctgtgtgggatttcttgggattacatgggctaacagaagaagataagaggaaattaataaacaggcgaactc gtcactatggcaaggacacctccattgtggagaacagaggatttgatactgtggacacgccgatgggagagaggcggagg acgaggaggaaagaccccgcccacatggccatttggagggcagccaccagcaccatggggaaaaagaagaagagacgtcc agcatttggaagaagttttactccaggaagtgtaaaaaaagaacacaaaaccaagctaccagattggatgaaagcagaga gattctttgatgatctcactgaggatgaagtacggagtagagcagaagtagagggaattaagggttttgatactgttgat gcccctatgggaagaagatcaagaatgtatgtaattctgaataacagcatcataaacatgtttctatgtacaaagatatt agatacacagatgaccgagcccatagactttaagccggggagtcgtggtatagacacgttagagggacctatactacagg agctcgaggagagatgctgcgactttatatcatgtgattgtaaaagggcgtgtagaccagatagtgaatttgatctagat aatgacgataaacgacctttctttacctactttatctcctttgtacaaactgttattatgatctgtgctctggccgtcta cggatttgcaccacttggtgttgatgagatcagtgaacaggaattgattttgaagccaagtttagtcattgaactagaga aaagatcagagtttggaaatttttggcttggtccaagtcagcaaaacctaatacatctaggagccaaatattctccctgt atgagaaaggatcctaatctggaagccgtacttaaactagacagagatgaagaaaggatgacaggctgttgtgtcaggga cgatggctcaggatgtgtacaaactatacaaaggaaatgtagtggtttactgtccacatttgtgagatggaatgacacca gtaatattagaggtggatacaagtcaggggcagtttgtggaacagatcctaggtactgtaaaaagccagcttcaacaaaa ccttttgagtgggacaagaatgattttactaactggcctgtaaactgttttgaggagatatgtggaatgataccatttgt ggacgatgacagacctgatcaattctcccgagtcctctcggctaatcttctacatgcaggggttttccatttggctgtat ccctcttgttccagttgattataatgagaatggcagaaaaggagataggttgggttagaatggccctgatatatctgggt agtggtactgtaggtacactagctagctcagtactactaccttaccaagtggaggtatgtacacagaagataagttgggt tagaatggccctgatacatgtatatctgggtagtggtactgtaggtacactagctagctcagtactactacctcaccaag tggaggtatttacacagaagagaagttgggttagaatggccctgacgtgtctaggtagtggtactgtaggtacactagct agctcagtactactaccttactga |
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Protein
| Protein ID | pfu_aug2.0_1190.1_01458.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1190.1_01458.t1 MLNCFIDVPDCKQSITITVMSGLLEKVKKPVWDFLGLHGLTEEDKRKLINRRTRHYGKDTSIVENRGFDTVDTPMGERRR TRRKDPAHMAIWRAATSTMGKKKKRRPAFGRSFTPGSVKKEHKTKLPDWMKAERFFDDLTEDEVRSRAEVEGIKGFDTVD APMGRRSRMYVILNNSIINMFLCTKILDTQMTEPIDFKPGSRGIDTLEGPILQELEERCCDFISCDCKRACRPDSEFDLD NDDKRPFFTYFISFVQTVIMICALAVYGFAPLGVDEISEQELILKPSLVIELEKRSEFGNFWLGPSQQNLIHLGAKYSPC MRKDPNLEAVLKLDRDEERMTGCCVRDDGSGCVQTIQRKCSGLLSTFVRWNDTSNIRGGYKSGAVCGTDPRYCKKPASTK PFEWDKNDFTNWPVNCFEEICGMIPFVDDDRPDQFSRVLSANLLHAGVFHLAVSLLFQLIIMRMAEKEIGWVRMALIYLG SGTVGTLASSVLLPYQVEVCTQKISWVRMALIHVYLGSGTVGTLASSVLLPHQVEVFTQKRSWVRMALTCLGSGTVGTLA SSVLLPY |
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