Gene
| Gene Model ID | pfu_aug2.0_1190.1_01459 |
|---|---|
| Locus | scaffold1190.1 : 90096 ... 104350 : + |
| To GenomeBrowser | scaffold1190.1:90096..104350 |
| Genes list of scaffold | scaffold1190.1 |
| Synonym | pfu_aug1.0_13008.1_68584 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1190.1_01459.t1 | 2 | 1 | Rhomboid | 298 | 375 | 3.3e-06 | 27.1 | 8.8e-10 | 3.3e-06 | 27.1 |
| pfu_aug2.0_1190.1_01459.t1 | 2 | 2 | Rhomboid | 389 | 409 | 3.3e-06 | 27.1 | 0.14 | 530.0 | 0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1190.1_01459.t1 | gi|676461834|ref|XP_009056071.1| | hypothetical protein LOTGIDRAFT_119360 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1190.1_01459.t1 | gi|742188560|ref|XP_010854813.1| | PREDICTED: inactive rhomboid protein 2 [Bison bison bison] | 0.0 |
| pfu_aug2.0_1190.1_01459.t1 | gi|690455690|ref|XP_009327182.1| | PREDICTED: inactive rhomboid protein 2 [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_1190.1_01459.t1 | gi|524891037|ref|XP_005102057.1| | PREDICTED: inactive rhomboid protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1190.1_01459.t1 | gi|591331145|ref|XP_007091384.1| | PREDICTED: inactive rhomboid protein 2 [Panthera tigris altaica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1190.1_01459.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1190.1_01459.t1 atgaggagtattagatatgtactggtaagtaggactgaggagaaacaaaaagctgaggactgtatgggatttcgacctag aagttgcccatgtgttaggaaagatgaagatgaggttgatacgactttgatcccatactttacctattatatcacctttg tacagactattatactgatctgtaccttagccatatatggttttggagactttgggtttaaagaaattacaacacaagaa gtggttttaaaacccaatttagctttagagctagatcaacgttcagagtttggcaacatgtggggcggccctgatcaaca aagtttgatacatttgggagccaagtactcaccatgtatgaggaaggaccctaacatagctgaacttttgatgttagatc gagaggaagagaggaaaagtggttgttgtgtgagagatgacggatcaggatgtgtacaaactgtaccggagaaatgtagt cgattctcggaaaatttgcacgtgtccaaccagaattatactaccatgaacaccgaaagtattagtagatgggacagcag tagtaatgttaagggaggatacaaatcaggagcagtgtgtgggctggatccaagatactgcaaaaagccagcatcaacac cgccatttgaatgggacaaaaatgattttacggaatggcctatatgtgaggataccagcaaaccagggcatctccaacct aactgtgcaaacaatgattctgactgtcacatgacctgtgaccttctaggacgaccctgttgtcatggtatccagggtga atgcatgattactaccagagaacactgtgaatttagacagggattctttcacgaagataaattcttatgctcacaagtga attgtatggagcaggttggaccttcggcagcacagtggggcgttatagcttgtatacttgtagaagtcattgacatgatt gtaggagacaagtgggagaataccaagctatatatggcccttggggttataataatagcctctgttgttatgtttgtact gggtttattgttaccatttatagataacgtagctaacttctttggtggccttacaggagcactattggctataatgttac tgaaggacatagagaaaggttgctgtaacagggttgtagccttcatggtttcctttatattgttagctctcatgtttatc attttgatgataatattttatgttgcacccctatctgacgcctcgtggataaagtatctgaactgtcaagactttaccga tagtttctgcaggaatatggacgtagtacctcataatagaggtgctacttactctaggtatacataa |
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Protein
| Protein ID | pfu_aug2.0_1190.1_01459.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1190.1_01459.t1 MRSIRYVLVSRTEEKQKAEDCMGFRPRSCPCVRKDEDEVDTTLIPYFTYYITFVQTIILICTLAIYGFGDFGFKEITTQE VVLKPNLALELDQRSEFGNMWGGPDQQSLIHLGAKYSPCMRKDPNIAELLMLDREEERKSGCCVRDDGSGCVQTVPEKCS RFSENLHVSNQNYTTMNTESISRWDSSSNVKGGYKSGAVCGLDPRYCKKPASTPPFEWDKNDFTEWPICEDTSKPGHLQP NCANNDSDCHMTCDLLGRPCCHGIQGECMITTREHCEFRQGFFHEDKFLCSQVNCMEQVGPSAAQWGVIACILVEVIDMI VGDKWENTKLYMALGVIIIASVVMFVLGLLLPFIDNVANFFGGLTGALLAIMLLKDIEKGCCNRVVAFMVSFILLALMFI ILMIIFYVAPLSDASWIKYLNCQDFTDSFCRNMDVVPHNRGATYSRYT |
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