Gene
| Gene Model ID | pfu_aug2.0_12.1_06724 |
|---|---|
| Locus | scaffold12.1 : 248426 ... 256674 : - |
| To GenomeBrowser | scaffold12.1:248426..256674 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_2134.1_66205 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| wd repeat-containing protein 55 | GO:0001654 GO:0005634 GO:0016070 GO:0042254 GO:0048538 GO:0048794 GO:0060465 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06724.t2 | 3 | 1 | WD40 | 12 | 28 | 1.8e-14 | 52.9 | 0.0018 | 8.9 | 6.3 |
| pfu_aug2.0_12.1_06724.t2 | 3 | 2 | WD40 | 47 | 79 | 1.8e-14 | 52.9 | 1.5e-10 | 7.5e-07 | 28.7 |
| pfu_aug2.0_12.1_06724.t2 | 3 | 3 | WD40 | 91 | 123 | 1.8e-14 | 52.9 | 4.4e-06 | 0.022 | 14.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06724.t2 | gi|390351015|ref|XP_003727552.1| | 1.0e-31 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06724.t1 atggttcatcccaagacaatacagtttgatgatgtggtggtggacttgtgttttcatcctagtaaaaatgttatagctgc cggggacatcacaggggaagttactctgcattcatacagtacagaaaaacagaatagtttactgatgacccttaatcatc ataagaaagcatgccgagcgataagattctccggggatgggaaccagttgtacacggcatctaaagataaatccatacag actgtagatcttaacactggagctgtgaaaactaaaatatccaaggcacatagtgcaccaatatacagtctactagaaac aggagataactttgtggcgacaggtgatgatgatggccatcttaagcacaagcagaaagtcatatgtggaagtggcgagg gagtcctcaacatctttaattggggagagtggggcaatataagtgacagattccctggtcacccaatggctgtgaacata ttaccgaacaggtttttaggtgttgtcggcgaacatgaagattttcccgttgagaacctgagcttgtcacatgaccatct atatatagccagctgttcacatgatcagacaatcaaattctggaacatagaagaaataaaagacgaaaaagtgaatacaa aaaagaaggctaagaggactaacaaacctaaagcgtttaaatcggcagcaaaggaaaatttctttgctggattggcagag gaaggggagtccagtaaaacagaatctaaagatggcgacgatgaggaggaggaggaggacagtgatgataatgacgatga tagtgattcagacaatgatgatgataatgattaa |
|
| Transcript ID | pfu_aug2.0_12.1_06724.t2 |
| Definition | - |
>pfu_aug2.0_12.1_06724.t2 atggttcatcccaagacaatacagtttgatgatgtggtggtggacttgtgttttcatcctagtaaaaatgttatagctgc cggggacatcacaggggaagttactctgcattcatacagtacagaaaaacagaatagtttactgatgacccttaatcatc ataagaaagcatgccgagcgataagattctccggggatgggaaccagttgtacacggcatctaaagataaatccatacag actgtagatcttaacactggagctgtgaaaactaaaatatccaaggcacatagtgcaccaatatacagtctactagaaac aggagataactttgtggcgacaggtgatgatgatggccatcttaaggtgagttcacctctaggataa |
|
Protein
| Protein ID | pfu_aug2.0_12.1_06724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06724.t1 MVHPKTIQFDDVVVDLCFHPSKNVIAAGDITGEVTLHSYSTEKQNSLLMTLNHHKKACRAIRFSGDGNQLYTASKDKSIQ TVDLNTGAVKTKISKAHSAPIYSLLETGDNFVATGDDDGHLKHKQKVICGSGEGVLNIFNWGEWGNISDRFPGHPMAVNI LPNRFLGVVGEHEDFPVENLSLSHDHLYIASCSHDQTIKFWNIEEIKDEKVNTKKKAKRTNKPKAFKSAAKENFFAGLAE EGESSKTESKDGDDEEEEEDSDDNDDDSDSDNDDDND |
|
| Protein ID | pfu_aug2.0_12.1_06724.t2 |
| Definition | - |
>pfu_aug2.0_12.1_06724.t2 MVHPKTIQFDDVVVDLCFHPSKNVIAAGDITGEVTLHSYSTEKQNSLLMTLNHHKKACRAIRFSGDGNQLYTASKDKSIQ TVDLNTGAVKTKISKAHSAPIYSLLETGDNFVATGDDDGHLKVSSPLG |
|