Gene
| Gene Model ID | pfu_aug2.0_12.1_06728 |
|---|---|
| Locus | scaffold12.1 : 305341 ... 325309 : - |
| To GenomeBrowser | scaffold12.1:305341..325309 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_6361.1_31176 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| syntaxin-binding protein 4 isoform x2 | GO:0009987 GO:0044699 GO:0050789 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06728.t1 | 1 | 1 | WW | 481 | 510 | 1.9e-09 | 37.1 | 4.7e-13 | 3.5e-09 | 36.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06728.t1 | gi|585721849|ref|XP_006813347.1| | PREDICTED: syntaxin-binding protein 4-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_12.1_06728.t1 | gi|591376358|ref|XP_007062847.1| | PREDICTED: syntaxin-binding protein 4 [Chelonia mydas] | 0.0 |
| pfu_aug2.0_12.1_06728.t1 | gi|641759989|ref|XP_008165765.1| | PREDICTED: syntaxin-binding protein 4 isoform X4 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_12.1_06728.t1 | gi|641759987|ref|XP_008165764.1| | PREDICTED: syntaxin-binding protein 4 isoform X3 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_12.1_06728.t1 | gi|641759992|ref|XP_008165766.1| | PREDICTED: syntaxin-binding protein 4 isoform X6 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06728.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06728.t1 atggatatattagagaagcagaatggtatgagcttcccctgtacaccagttccgcctgagttccagctgtcacggtccaa tacacctgccttcagaggtaatgatggccacaagtcaccatttactgtcaatgcatcagagcacggtaaaagccctagat catcgcccagaccaaatcaacttaatcttcaaaagaacacacatgatgagcatgttgttcccaacggacatgttcctgag gagatgatgaatggacagtctatgtacgatgagaggttctcaccccagggtacaggaatggtacctccccatccccaggg tcagcagagacgaaatatgctgcccagcatgtcctctacaccacatgttaaaggtcaggacaggagccatcgttcataca gtctgtctcccatgactaccttatcccctgtacatggctccatgttcatgtccccccagggacacacctcatacagcaca cagagtttgccacgcccttcccatccccacacggcatccagagctcgtaaactctcacttgatcccactgtaaggctcag gatagagaaactggaagtggcattacgttaccttggtttgaaccccacaccggagcaggagtcggctctcagacagaggt tacgagtcagtagggatggtacagtgaattatggagattttgtagctcatgccagggagattttcaagcaggagttgtta gataggaacatagatccccgagcaatgttgtttgctgctagtgatatacacgacatgttggagccaccctccttcaggcc taatatgaacagttatgatcgtcagacggagacagtagactcactcaggacggagagagatgaacttcttatggagatac aaagacttaagctaaaggttcatgaaagtgatgctgcaagactgaggatggaagaggaaatgtttgacataaaaaagaaa gccttatctgccatagatgaatctcattctttaaggaagaaggtgcacattgctgagagagcccagaaagccgcgcggaa tatggaacatgattatgaggaagtcgtacatcttctggaaggagaaatcgctaaactgaaaactcaatcaactggttcta ttgatagtgctacatcacaacagaaaatagccctgctgagctgtcaactgaaaaagtccgaagccgagaaaagaacatat gaagtggctacagagaaactgctcaagtttgctgagggtgttcatgaagcattcagaggtcaaagttcacggcaaccatt aagtggaaatcctggtgcttctagagggatgcagttaactggtttccttggcaaccataagccaataaatcccaaaaatg tttcttctgaagccaaggaaataattcaagcagttattacactgatagaaacagatcctggtacagagctgatgaatgca ctgccgtatggatgggaggaagcttacactgaggatggcctcaaatattacattaaccatatacaacaaatcacaacatg gagtcatcctagatcaggcatacagcaaatgtctgaaaaacctgcagcaaaatcatcacagcaacgtgacagcaaatctc cgcaacctgacagcagatcattacagcaatcagacagcaacatgcagataaagcaacaaacaaaacagccagacaacaaa actctgacgaagccagacagtaaaacagtgtcacagcaacccgtcagtcaaatgacatcacagcaacctaacaacaaaca acgaatacaacctggtgaaaagcaacctcaggtaaaagatggaaaacaaatctga |
|
Protein
| Protein ID | pfu_aug2.0_12.1_06728.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06728.t1 MDILEKQNGMSFPCTPVPPEFQLSRSNTPAFRGNDGHKSPFTVNASEHGKSPRSSPRPNQLNLQKNTHDEHVVPNGHVPE EMMNGQSMYDERFSPQGTGMVPPHPQGQQRRNMLPSMSSTPHVKGQDRSHRSYSLSPMTTLSPVHGSMFMSPQGHTSYST QSLPRPSHPHTASRARKLSLDPTVRLRIEKLEVALRYLGLNPTPEQESALRQRLRVSRDGTVNYGDFVAHAREIFKQELL DRNIDPRAMLFAASDIHDMLEPPSFRPNMNSYDRQTETVDSLRTERDELLMEIQRLKLKVHESDAARLRMEEEMFDIKKK ALSAIDESHSLRKKVHIAERAQKAARNMEHDYEEVVHLLEGEIAKLKTQSTGSIDSATSQQKIALLSCQLKKSEAEKRTY EVATEKLLKFAEGVHEAFRGQSSRQPLSGNPGASRGMQLTGFLGNHKPINPKNVSSEAKEIIQAVITLIETDPGTELMNA LPYGWEEAYTEDGLKYYINHIQQITTWSHPRSGIQQMSEKPAAKSSQQRDSKSPQPDSRSLQQSDSNMQIKQQTKQPDNK TLTKPDSKTVSQQPVSQMTSQQPNNKQRIQPGEKQPQVKDGKQI |
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