Gene
| Gene Model ID | pfu_aug2.0_12.1_06729 |
|---|---|
| Locus | scaffold12.1 : 330010 ... 340544 : + |
| To GenomeBrowser | scaffold12.1:330010..340544 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_16182.1_46949 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06729.t1 | 3 | 1 | ubiquitin | 15 | 28 | 6.4e-07 | 28.6 | 0.84 | 4200.0 | -2.8 |
| pfu_aug2.0_12.1_06729.t1 | 3 | 1 | Rad60-SLD_2 | 43 | 110 | 3.4e-34 | 117.0 | 2.1e-18 | 1.0e-14 | 54.3 |
| pfu_aug2.0_12.1_06729.t1 | 3 | 2 | ubiquitin | 92 | 111 | 6.4e-07 | 28.6 | 1.6e-05 | 0.077 | 12.4 |
| pfu_aug2.0_12.1_06729.t1 | 3 | 2 | Rad60-SLD_2 | 115 | 164 | 3.4e-34 | 117.0 | 5.6e-16 | 2.8e-12 | 46.5 |
| pfu_aug2.0_12.1_06729.t1 | 3 | 3 | ubiquitin | 121 | 152 | 6.4e-07 | 28.6 | 8.6e-06 | 0.042 | 13.2 |
| pfu_aug2.0_12.1_06729.t1 | 3 | 3 | Rad60-SLD_2 | 165 | 193 | 3.4e-34 | 117.0 | 5.1e-06 | 0.025 | 14.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06729.t1 | gi|676434776|ref|XP_009047340.1| | hypothetical protein LOTGIDRAFT_230575 [Lottia gigantea] | 7.00649e-45 |
| pfu_aug2.0_12.1_06729.t1 | gi|551513931|ref|XP_005808477.1| | PREDICTED: ubiquitin-like protein 3-like [Xiphophorus maculatus] | 3.0e-39 |
| pfu_aug2.0_12.1_06729.t1 | gi|704233037|ref|XP_010154625.1| | PREDICTED: ubiquitin-like protein 3 [Eurypyga helias] | 4.0e-39 |
| pfu_aug2.0_12.1_06729.t1 | gi|498982024|ref|XP_004550203.1| | PREDICTED: ubiquitin-like protein 3 [Maylandia zebra] | 6.0e-39 |
| pfu_aug2.0_12.1_06729.t1 | gi|675662128|ref|XP_008996321.1| | PREDICTED: ubiquitin-like protein 3 isoform X1 [Callithrix jacchus] | 7.0e-39 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06729.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06729.t1 atggctgtcaagggctctgtttggctgacacattttcaatttttcagcgaccgcttcatagaatttcatgaaaccttaca ggaaggaagtactctattctccactatcattgttttgtctgcaactcaaatcaatctacgacttatattggtgagcggaa agaccaaagaatttttatttttgcctactgattctgcagctgacataacagactgtgtatatactaactggccgtcagaa tggaatgatgagagcctgccatcaagtaatatattacggctgatctatcagggaagatttctacatggaaatgtaacgtt aggagaatggaatgatgagagcctgccatcaagtaatatattacggctgatctatcagggaagatttctacacggaaacg taacgttaggagctctacagcttcctctaggcaagaccactgtgatgcatttagtggccagggaaaacttacctgaacca aacaatcaagctctacagcttcctctaggaaagaccactgtgatgcatttagtggccagggaaaacttacctgaaccaaa caatcaagctccctacgaggagaatattgcatctttagagaagtacaagcatagctgttggaatgttatatctacctcgg atgacttcatctgtgtagatgataacatcctagcgaaatttgctattagtcttataaatgattattatctggaataa |
|
Protein
| Protein ID | pfu_aug2.0_12.1_06729.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06729.t1 MAVKGSVWLTHFQFFSDRFIEFHETLQEGSTLFSTIIVLSATQINLRLILVSGKTKEFLFLPTDSAADITDCVYTNWPSE WNDESLPSSNILRLIYQGRFLHGNVTLGEWNDESLPSSNILRLIYQGRFLHGNVTLGALQLPLGKTTVMHLVARENLPEP NNQALQLPLGKTTVMHLVARENLPEPNNQAPYEENIASLEKYKHSCWNVISTSDDFICVDDNILAKFAISLINDYYLE |
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