Gene
| Gene Model ID | pfu_aug2.0_12.1_06731 |
|---|---|
| Locus | scaffold12.1 : 359445 ... 364519 : - |
| To GenomeBrowser | scaffold12.1:359445..364519 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ran gtpase-activating protein 1 | GO:0044424 GO:0044699 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06731.t1 | 1 | 1 | RanGAP1_C | 5 | 163 | 4.0e-39 | 133.9 | 6.30584e-43 | 4.7e-39 | 133.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06731.t1 | gi|676490897|ref|XP_009065419.1| | hypothetical protein LOTGIDRAFT_168884 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_12.1_06731.t1 | gi|524880562|ref|XP_005096943.1| | PREDICTED: ran GTPase-activating protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_12.1_06731.t1 | gi|390333375|ref|XP_796931.2| | PREDICTED: ran GTPase-activating protein 1 [Strongylocentrotus purpuratus] | 2.0e-30 |
| pfu_aug2.0_12.1_06731.t1 | gi|148232694|ref|NP_001080230.1| | RAN GTPase activating protein 1 [Xenopus laevis] | 3.0e-30 |
| pfu_aug2.0_12.1_06731.t1 | gi|183986703|ref|NP_001116940.1| | ran GTPase-activating protein 1 [Xenopus (Silurana) tropicalis] | 1.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06731.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06731.t1 atgggcatgacagtgtccataaaggagtttgtgtcatttccttcaccgtctaagcttataggtctaggtgatcaacgagc acaagttataacagatgaattagggcaagatataagtgatatggaaaaagctgtccagatgttcatgaaggtgtcaagtg tagtgacacaggatgacatggaaacgaaggaagcagcttgtcaatgtgctgacagaatcatggaggaaacgatacagaga aatgcggatgttgctgcagcaatggtcgccaacacgttacttgtttacctaggtgttataaagggtgaagacaagaagta ccgtccccctagtaatattacaggtccacttctcatactagaacacatggtcagacagccatactttcctaaattctcaa gggaaatattacagaccttcattggaaaaccaaatccaattttggatcatgcttctacagcgagacacaaactgttacaa actctcttcacgttctga |
|
Protein
| Protein ID | pfu_aug2.0_12.1_06731.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06731.t1 MGMTVSIKEFVSFPSPSKLIGLGDQRAQVITDELGQDISDMEKAVQMFMKVSSVVTQDDMETKEAACQCADRIMEETIQR NADVAAAMVANTLLVYLGVIKGEDKKYRPPSNITGPLLILEHMVRQPYFPKFSREILQTFIGKPNPILDHASTARHKLLQ TLFTF |
|