Gene
| Gene Model ID | pfu_aug2.0_12.1_06732 |
|---|---|
| Locus | scaffold12.1 : 365052 ... 378019 : - |
| To GenomeBrowser | scaffold12.1:365052..378019 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_13738.1_10642 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ran gtpase-activating protein 1 | GO:0005737 GO:0044699 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06732.t1 | 8 | 1 | LRR_6 | 49 | 72 | 3.1e-24 | 82.2 | 0.0082 | 20.0 | 5.6 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 1 | LRR_8 | 101 | 124 | 2.0e-06 | 27.4 | 0.088 | 220.0 | 1.7 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 2 | LRR_6 | 115 | 133 | 3.1e-24 | 82.2 | 0.00066 | 1.6 | 9.0 |
| pfu_aug2.0_12.1_06732.t1 | 6 | 1 | LRR_1 | 115 | 125 | 7.3e-08 | 31.4 | 0.031 | 77.0 | 3.9 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 1 | LRR_7 | 115 | 124 | 6.9e-06 | 25.4 | 0.13 | 320.0 | 2.3 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 3 | LRR_6 | 142 | 165 | 3.1e-24 | 82.2 | 9.6e-06 | 0.024 | 14.6 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 2 | LRR_7 | 144 | 155 | 6.9e-06 | 25.4 | 0.007 | 17.0 | 6.1 |
| pfu_aug2.0_12.1_06732.t1 | 6 | 2 | LRR_1 | 145 | 155 | 7.3e-08 | 31.4 | 0.016 | 39.0 | 4.8 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 2 | LRR_8 | 145 | 153 | 2.0e-06 | 27.4 | 0.14 | 350.0 | 1.0 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 4 | LRR_6 | 189 | 203 | 3.1e-24 | 82.2 | 0.0091 | 22.0 | 5.4 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 3 | LRR_8 | 230 | 268 | 2.0e-06 | 27.4 | 1.5e-05 | 0.036 | 13.8 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 5 | LRR_6 | 236 | 259 | 3.1e-24 | 82.2 | 4.5e-06 | 0.011 | 15.6 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 3 | LRR_7 | 237 | 251 | 6.9e-06 | 25.4 | 0.0054 | 13.0 | 6.4 |
| pfu_aug2.0_12.1_06732.t1 | 6 | 3 | LRR_1 | 238 | 262 | 7.3e-08 | 31.4 | 0.0018 | 4.4 | 7.7 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 6 | LRR_6 | 266 | 287 | 3.1e-24 | 82.2 | 0.00048 | 1.2 | 9.4 |
| pfu_aug2.0_12.1_06732.t1 | 6 | 4 | LRR_1 | 267 | 279 | 7.3e-08 | 31.4 | 0.49 | 1200.0 | 0.2 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 7 | LRR_6 | 294 | 315 | 3.1e-24 | 82.2 | 0.00019 | 0.48 | 10.6 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 4 | LRR_8 | 294 | 334 | 2.0e-06 | 27.4 | 0.00067 | 1.7 | 8.4 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 4 | LRR_7 | 294 | 307 | 6.9e-06 | 25.4 | 0.0064 | 16.0 | 6.2 |
| pfu_aug2.0_12.1_06732.t1 | 6 | 5 | LRR_1 | 295 | 307 | 7.3e-08 | 31.4 | 0.0064 | 16.0 | 6.0 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 5 | LRR_8 | 295 | 334 | 2.0e-06 | 27.4 | 0.00047 | 1.2 | 8.9 |
| pfu_aug2.0_12.1_06732.t1 | 5 | 5 | LRR_7 | 323 | 334 | 6.9e-06 | 25.4 | 0.3 | 750.0 | 1.2 |
| pfu_aug2.0_12.1_06732.t1 | 6 | 6 | LRR_1 | 324 | 335 | 7.3e-08 | 31.4 | 0.11 | 260.0 | 2.3 |
| pfu_aug2.0_12.1_06732.t1 | 8 | 8 | LRR_6 | 326 | 339 | 3.1e-24 | 82.2 | 0.0063 | 15.0 | 5.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06732.t1 | gi|729719662|ref|XP_010560303.1| | PREDICTED: ran GTPase-activating protein 1 isoform X3 [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_12.1_06732.t1 | gi|564228321|ref|XP_006258612.1| | PREDICTED: ran GTPase-activating protein 1 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_12.1_06732.t1 | gi|701362983|ref|XP_009985375.1| | PREDICTED: ran GTPase-activating protein 1 [Tauraco erythrolophus] | 0.0 |
| pfu_aug2.0_12.1_06732.t1 | gi|729719660|ref|XP_010560227.1| | PREDICTED: ran GTPase-activating protein 1 isoform X2 [Haliaeetus leucocephalus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06732.t1 atggcttcttctgatgtttcagatgttgctgatcagctagccaaaactaaagtagacgaacaatatgaacttaattttaa aggaaggggattgaaactgaatactgccgaagatgccaaagacataattaaagagatagaagaatgtcgtacaatgacgg cattacgtttggagggcaatacaatgggagtggaggctgcagaagctatagctaaagcaatacaaaaacatccagaattt aagagggctctctggagtgatatgtttacaggccgacttaaaacagaaattcctaaagctctacagtttctgggtgatag catgatacaggcaggggttggtctggtagaacttgatctcagtgacaatgcattcggtcctaatggtgtggttgggctgg tcgacttcatcaagagtccaagctgttacacactacaggaattacgtctcaataataacggcctcggtattggaggaggc aagatgttagcagaaagtttaacagaatgtcacaaacggagcatggaagccggcaagccattctgtctcaaagtatttat atctggtcgtaacagattagaaaatgatggtgcaatggcattagctaaagtatttaagcttgtaggaacactagaggaag tggccatgcctcagaatggtatatatcatcctggtattacagcattagccgatgccttctctcaaaatcctcgtcttaag atcttaaatctcagtgataacacattcactcaggcaggagctaaaagtatggcaaaggttttaccaaagcttcaggaaat agaagtaattaattttagtgattgtctccttaaaacagagggagctttagctttatccaaggctttaaaagaaggacata ccaaattgaaagagcttaatctatatggtaatgaaataaataaaacaggagcaaatgctgtagcagaaaatatggaaaat aaaccagcacttcttaggctagatcttaactgtaatatgcttggtgaagagggagtggatgaagtgagaggtacaatgga agcaatgggaaaactagatgccttagcttctctgagtgaggatgagggatccgatgaagaagacgaggaacacggtgacg gagatggagaggagataccggccgaggaggagagagagggggaggttgtagacgaccccgccctacaagtcaaaggcaag gccatcacacccaaaaaacagagagaagattccacacttgatctaacagacgtaatgggaaagctgaatctgtcttga |
|
Protein
| Protein ID | pfu_aug2.0_12.1_06732.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06732.t1 MASSDVSDVADQLAKTKVDEQYELNFKGRGLKLNTAEDAKDIIKEIEECRTMTALRLEGNTMGVEAAEAIAKAIQKHPEF KRALWSDMFTGRLKTEIPKALQFLGDSMIQAGVGLVELDLSDNAFGPNGVVGLVDFIKSPSCYTLQELRLNNNGLGIGGG KMLAESLTECHKRSMEAGKPFCLKVFISGRNRLENDGAMALAKVFKLVGTLEEVAMPQNGIYHPGITALADAFSQNPRLK ILNLSDNTFTQAGAKSMAKVLPKLQEIEVINFSDCLLKTEGALALSKALKEGHTKLKELNLYGNEINKTGANAVAENMEN KPALLRLDLNCNMLGEEGVDEVRGTMEAMGKLDALASLSEDEGSDEEDEEHGDGDGEEIPAEEEREGEVVDDPALQVKGK AITPKKQREDSTLDLTDVMGKLNLS |
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