Gene
| Gene Model ID | pfu_aug2.0_12.1_06733 |
|---|---|
| Locus | scaffold12.1 : 379250 ... 401044 : + |
| To GenomeBrowser | scaffold12.1:379250..401044 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_5002.1_67129 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06733.t2 | 10 | 1 | LRR_6 | 91 | 111 | 2.3e-19 | 67.2 | 0.00019 | 0.35 | 11.0 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 1 | LRR_1 | 93 | 103 | 1.6e-06 | 27.3 | 0.2 | 360.0 | 1.8 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 1 | LRR_7 | 94 | 102 | 9.0e-06 | 25.0 | 2.1 | 3900.0 | -1.0 |
| pfu_aug2.0_12.1_06733.t2 | 6 | 1 | LRR_4 | 114 | 130 | 4.2e-07 | 29.4 | 0.039 | 72.0 | 3.1 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 2 | LRR_6 | 118 | 138 | 2.3e-19 | 67.2 | 3.5e-07 | 0.00065 | 19.5 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 2 | LRR_7 | 119 | 132 | 9.0e-06 | 25.0 | 0.098 | 180.0 | 3.0 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 2 | LRR_1 | 121 | 132 | 1.6e-06 | 27.3 | 0.09 | 170.0 | 2.9 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 3 | LRR_6 | 147 | 165 | 2.3e-19 | 67.2 | 0.3 | 560.0 | 1.1 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 3 | LRR_7 | 148 | 159 | 9.0e-06 | 25.0 | 0.51 | 950.0 | 0.9 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 3 | LRR_1 | 149 | 159 | 1.6e-06 | 27.3 | 1.1 | 2000.0 | -0.4 |
| pfu_aug2.0_12.1_06733.t2 | 6 | 2 | LRR_4 | 151 | 188 | 4.2e-07 | 29.4 | 0.036 | 66.0 | 3.2 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 4 | LRR_6 | 175 | 192 | 2.3e-19 | 67.2 | 0.0021 | 3.9 | 7.8 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 4 | LRR_7 | 175 | 186 | 9.0e-06 | 25.0 | 0.038 | 70.0 | 4.3 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 4 | LRR_1 | 176 | 188 | 1.6e-06 | 27.3 | 0.0075 | 14.0 | 6.2 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 5 | LRR_6 | 203 | 223 | 2.3e-19 | 67.2 | 2.0e-05 | 0.038 | 14.0 |
| pfu_aug2.0_12.1_06733.t2 | 6 | 3 | LRR_4 | 204 | 242 | 4.2e-07 | 29.4 | 9.1e-06 | 0.017 | 14.7 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 5 | LRR_1 | 204 | 215 | 1.6e-06 | 27.3 | 0.0067 | 12.0 | 6.3 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 5 | LRR_7 | 204 | 215 | 9.0e-06 | 25.0 | 0.0033 | 6.2 | 7.4 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 6 | LRR_6 | 229 | 251 | 2.3e-19 | 67.2 | 0.0049 | 9.1 | 6.6 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 6 | LRR_7 | 230 | 243 | 9.0e-06 | 25.0 | 0.025 | 47.0 | 4.8 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 6 | LRR_1 | 231 | 243 | 1.6e-06 | 27.3 | 0.22 | 410.0 | 1.7 |
| pfu_aug2.0_12.1_06733.t2 | 6 | 4 | LRR_4 | 251 | 270 | 4.2e-07 | 29.4 | 0.55 | 1000.0 | -0.6 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 7 | LRR_6 | 257 | 272 | 2.3e-19 | 67.2 | 0.15 | 280.0 | 2.0 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 7 | LRR_1 | 260 | 271 | 1.6e-06 | 27.3 | 0.78 | 1500.0 | 0.0 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 7 | LRR_7 | 260 | 274 | 9.0e-06 | 25.0 | 1.7 | 3100.0 | -0.7 |
| pfu_aug2.0_12.1_06733.t2 | 6 | 5 | LRR_4 | 279 | 300 | 4.2e-07 | 29.4 | 0.00046 | 0.85 | 9.3 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 8 | LRR_6 | 285 | 302 | 2.3e-19 | 67.2 | 0.00041 | 0.75 | 10.0 |
| pfu_aug2.0_12.1_06733.t2 | 6 | 6 | LRR_4 | 287 | 322 | 4.2e-07 | 29.4 | 0.00043 | 0.8 | 9.3 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 8 | LRR_7 | 287 | 300 | 9.0e-06 | 25.0 | 0.0081 | 15.0 | 6.3 |
| pfu_aug2.0_12.1_06733.t2 | 8 | 8 | LRR_1 | 288 | 307 | 1.6e-06 | 27.3 | 0.0017 | 3.2 | 8.1 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 9 | LRR_6 | 313 | 326 | 2.3e-19 | 67.2 | 2.5 | 4700.0 | -1.7 |
| pfu_aug2.0_12.1_06733.t2 | 10 | 10 | LRR_6 | 367 | 377 | 2.3e-19 | 67.2 | 4.0 | 7400.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06733.t2 | gi|641771276|ref|XP_008169718.1| | PREDICTED: leucine-rich repeat-containing protein-like isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_12.1_06733.t2 | gi|602666719|ref|XP_007438930.1| | PREDICTED: uncharacterized protein C14orf166B homolog, partial [Python bivittatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06733.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06733.t1 atgtctcgatctgctagaaaggcctttataacagaattggcagtaagatcagacgacgatgacgacgacgacaatgtaga tgaagaggaaggtcaaggccgaagggattccagcggtcagattgaatacggcagagcttgtaaaagatgtggagttgtcc cgctgtccgttttcaagaaacaattaaaaggattaaacatgtctcttaaattccaaaaactgaacccgagggccacaaag gcttgcaccatggggcttatgtttaactggaccatcagcagtttagacctacaaggctgtgagattggaccaatgggaac aaagtatttatgtgacgtactccagcagaaaccgaacatatcagacctaaatctgtccagtaacaagctgggtaccgagg gcttgaagcatctcaccaggcttctacagagcaatcattctgtcataaacctcgacattgcacataatgatttcaacgaa agcgacgcaatctacataaaagaaatcttggagggtgacaatagtgtgacagaactacgactcagtcataataaattctg tgaggatggagggcgtattatagcaagtggtctcgttaacaacgatttcctgaaggtgcttgacctgagctggaatcacc taagaggtgccggggcgtcagctctaggcttttcactcatgaaaaatactcatttagaagttttaaatgttgcctggaac ggttttgagattccgggttgccatggcttgggtcatggactggagggtaataaaaccctcatagagctgaatgtaggaac taaccgcatagggcttacagcgctatgtaaattactggaggggctcaagtacaactcaactttagaaagacttaatcttg cagacaatccattgacgtctagaggaactcttctggtgctacaggtcatagaaaaatgctcaaacgtcaaaaatgtggat tttgggatgcatccagtagaagaggaactacttgataaactaagagaaatccaggaaataaaacctcttacagtgcttca tggaaaggtgcaccttaaaacgaaaataggagacggggatcctacgatgtatttatccggagatcctatttgtatattat tcgaatttgcaaggataaaagaaattcctattctagaccttttcatcgcatttgatactgacgatagtcactcattaaca tgggatgaattcaaagaaggccttttgattaatcgcattccccttaggtctggtgatattgaccacttgatacgcaatat tgatataaatatggatggagaaatcaactttacggagttggtgattgcacagaaaagtcataatatgaaggtaaagaagt tactggacagaggaccgaaggcttttgccaatagccaagtgggcaaaattcactttgaacttcacaaatggtttcacgac aaggaagttagagtagaagcgtattctttgttcaatgatgaaagaatcggtggcttagaaccacggacaacagttcaaaa ttga |
|
| Transcript ID | pfu_aug2.0_12.1_06733.t2 |
| Definition | - |
>pfu_aug2.0_12.1_06733.t2 atgtctcgatctgctagaaaggcctttataacagaattggcagtaagatcagacgacgatgacgacgacgacaatgtaga tgaagaggaaggtcaaggccgaagggattccagcggtcagattgaatacggcagagcttgtaaaagatgtggagttgtcc cgctgtccgttttcaagaaacaattaaaaggattaaacatgtctcttaaattccaaaaactgaacccgagggccacaaag gcttgcaccatggggcttatgtttaactggaccatcagcagtttagacctacaaggctgtgagattggaccaatgggaac aaagtatttatgtgacgtactccagcagaaaccgaacatatcagacctaaatctgtccagtaacaagctgggtaccgagg gcttgaagcatctcaccaggcttctacagagcaatcattctgtcataaacctcgacattgcacataatgatttcaacgaa agcgacgcaatctacataaaagaaatcttggagggtgacaatagtgtgacagaactacgactcagtcataataaattctg tgaggatggagggcgtattatagcaagtggtctcgttaacaacgatttcctgaaggtgcttgacctgagctggaatcacc taagaggtgccggggcgtcagctctaggcttttcactcatgaaaaatactcatttagaagttttaaatgttgcctggaac ggttttgagattccgggttgccatggcttgggtcatggactggagggtaataaaaccctcatagagctgaatgtaggaac taaccgcatagggcttacagcgctatgtaaattactggaggggctcaagtacaactcaactttagaaagacttaatcttg cagacaatccattgacgtctagaggaactcttctggtgctacaggtcatagaaaaatgctcaaacgtcaaaaatgtggat tttgggattaatcgcattccccttaggtctggtgatattgaccacttgatacgcaatattgatataaatatggatggaga aatcaactttacggagttggtgattgcacagaaaagtcataatatgaaggtaaagaagttactggacagaggaccgaagg cttttgccaatagccaagtgggcaaaattcactttgaacttcacaaatggtttcacgacaaggaagttagagtagaagcg tattctttgttcaatgatgaaagaatcggtggcttagaaccacggacaacagttcaaaattga |
|
Protein
| Protein ID | pfu_aug2.0_12.1_06733.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06733.t1 MSRSARKAFITELAVRSDDDDDDDNVDEEEGQGRRDSSGQIEYGRACKRCGVVPLSVFKKQLKGLNMSLKFQKLNPRATK ACTMGLMFNWTISSLDLQGCEIGPMGTKYLCDVLQQKPNISDLNLSSNKLGTEGLKHLTRLLQSNHSVINLDIAHNDFNE SDAIYIKEILEGDNSVTELRLSHNKFCEDGGRIIASGLVNNDFLKVLDLSWNHLRGAGASALGFSLMKNTHLEVLNVAWN GFEIPGCHGLGHGLEGNKTLIELNVGTNRIGLTALCKLLEGLKYNSTLERLNLADNPLTSRGTLLVLQVIEKCSNVKNVD FGMHPVEEELLDKLREIQEIKPLTVLHGKVHLKTKIGDGDPTMYLSGDPICILFEFARIKEIPILDLFIAFDTDDSHSLT WDEFKEGLLINRIPLRSGDIDHLIRNIDINMDGEINFTELVIAQKSHNMKVKKLLDRGPKAFANSQVGKIHFELHKWFHD KEVRVEAYSLFNDERIGGLEPRTTVQN |
|
| Protein ID | pfu_aug2.0_12.1_06733.t2 |
| Definition | - |
>pfu_aug2.0_12.1_06733.t2 MSRSARKAFITELAVRSDDDDDDDNVDEEEGQGRRDSSGQIEYGRACKRCGVVPLSVFKKQLKGLNMSLKFQKLNPRATK ACTMGLMFNWTISSLDLQGCEIGPMGTKYLCDVLQQKPNISDLNLSSNKLGTEGLKHLTRLLQSNHSVINLDIAHNDFNE SDAIYIKEILEGDNSVTELRLSHNKFCEDGGRIIASGLVNNDFLKVLDLSWNHLRGAGASALGFSLMKNTHLEVLNVAWN GFEIPGCHGLGHGLEGNKTLIELNVGTNRIGLTALCKLLEGLKYNSTLERLNLADNPLTSRGTLLVLQVIEKCSNVKNVD FGINRIPLRSGDIDHLIRNIDINMDGEINFTELVIAQKSHNMKVKKLLDRGPKAFANSQVGKIHFELHKWFHDKEVRVEA YSLFNDERIGGLEPRTTVQN |
|