Gene
| Gene Model ID | pfu_aug2.0_12.1_06739 |
|---|---|
| Locus | scaffold12.1 : 503064 ... 517290 : - |
| To GenomeBrowser | scaffold12.1:503064..517290 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_39022.1_05067 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ap-1 complex subunit gamma-1 isoform x2 | GO:0005802 GO:0006886 GO:0008565 GO:0017137 GO:0019894 GO:0030131 GO:0030136 GO:0030742 GO:0035646 GO:0043323 GO:0048471 GO:0055037 GO:0090160 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06739.t1 | 1 | 1 | Adaptin_N | 24 | 566 | 0.0 | 461.1 | 0.0 | 0.0 | 460.9 |
| pfu_aug2.0_12.1_06739.t1 | 5 | 1 | HEAT_2 | 107 | 154 | 5.5e-07 | 29.7 | 0.02 | 48.0 | 4.3 |
| pfu_aug2.0_12.1_06739.t1 | 5 | 2 | HEAT_2 | 298 | 361 | 5.5e-07 | 29.7 | 0.00039 | 0.97 | 9.7 |
| pfu_aug2.0_12.1_06739.t1 | 5 | 3 | HEAT_2 | 377 | 462 | 5.5e-07 | 29.7 | 0.01 | 25.0 | 5.2 |
| pfu_aug2.0_12.1_06739.t1 | 5 | 4 | HEAT_2 | 417 | 524 | 5.5e-07 | 29.7 | 0.0062 | 15.0 | 5.9 |
| pfu_aug2.0_12.1_06739.t1 | 5 | 5 | HEAT_2 | 493 | 527 | 5.5e-07 | 29.7 | 0.16 | 410.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06739.t1 | gi|524868922|ref|XP_005091259.1| | PREDICTED: AP-1 complex subunit gamma-1-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_12.1_06739.t1 | gi|524868918|ref|XP_005091257.1| | PREDICTED: AP-1 complex subunit gamma-1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_12.1_06739.t1 | gi|524868924|ref|XP_005091260.1| | PREDICTED: AP-1 complex subunit gamma-1-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_12.1_06739.t1 | gi|28277340|gb|AAH45070.1| | Wu:fc30a11 protein, partial [Xenopus laevis] | 0.0 |
| pfu_aug2.0_12.1_06739.t1 | gi|147904637|ref|NP_001083997.1| | adaptor-related protein complex 1, gamma 1 subunit [Xenopus laevis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06739.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06739.t1 atgtccactcctaagagacttcgagatctcattcgtgagatccgctcagcacgcacagcggcagatgagagagcagtggt gcagaaggaatgtgcatccatccgtgactcattcagggatgaagacaatacttaccgatgcaggaacgttgccaagttgt tgtatattcacatgttagggtaccccgcccactttggacagttggaatgcctgaagttgatagcttcacagaagttcaca gataaacgtgtaggatatcttggtgccatgttactgttagatgaaagacaagatntcttgatcgctgctgatctgaatca tcaaacacagtacattcagagcttggctctctgtacactaggatctatatgctcagcagagatgagtagggatctggctg gtgaaatagaaaaaatgatcaaatcatccaacgcctatatcaaaaagaaggcaattctatgtgcgttctgtatcatacgt aaagtaccagacctgatggagatgtttattccagccacacgttccctcctcaatgagaaaaatcatggagtgctgctgac agctgtgtgtcttatagatgagatgtgtgaaaaaagtcctgatacactacaccatttcaggaagattgttcccgcacttg ttagaattttgaagaacttaattatggcgggctactctccagagcacgatgtatcaggcgtcagtaacccatttctccag gtcaaaattttgaggttactacgtgtgctgggaacaaacgacacagatgccagcgagaccatgaatgatattttagcaca ggttgccaccaacacggacaccagtaaaaatgtgggtcatgccatactttatgagattgtactaactataatgggcatta agtcagagtcgggtcttagggttctggctgtaaacatattaggaaggttcctactcaacagtgacaaaaatatcagatac gtagcattgaacactttattacgtgtggtacatgctgattacaatgctgtacagagacatagaacgaccattatggactg cttaaaagatcctgatatatctatcagaaaacgtgcggtagagttgtcatttgccttgattaacgctaacaatgtgagag gaatgatgaaagaactgctgtcgttcttagaaaattgtgatccggaattcaaagctgactgttgttctaacatagtccaa gcagcagaatcatatgctccaaacaagaggtggcacatagacactgtaatgaaagtcttaacaacggcgggtagttcagt gagggaggatgtagtgtccatactgatacagcttatagcagagacaaaccagctacacaattacacggtacaacaactgt ttaaacgtattgaggacgatgtatcccagcagcctctagtacaggtggcgtcttggtgtataggggagtacggagagaaa ctcgtgtcagggacatgtgaagaggatgaacctgtacaggtatctgaggatgaggtagtggacgtgttagagaaagtcct gtccatgaattactgtgaagaagtcaccaaagagtacgctatgaacgctctaatgaaactaagctctcggtttaggacct ccatagggaggataaaagctgtgatagaaaaatacagtagtagtcgtaatgtggagattcagcaaagatctgtggaattt acttgtatattcaaaaaatatgataacttaagcagcctttacgactga |
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Protein
| Protein ID | pfu_aug2.0_12.1_06739.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06739.t1 MSTPKRLRDLIREIRSARTAADERAVVQKECASIRDSFRDEDNTYRCRNVAKLLYIHMLGYPAHFGQLECLKLIASQKFT DKRVGYLGAMLLLDERQDXLIAADLNHQTQYIQSLALCTLGSICSAEMSRDLAGEIEKMIKSSNAYIKKKAILCAFCIIR KVPDLMEMFIPATRSLLNEKNHGVLLTAVCLIDEMCEKSPDTLHHFRKIVPALVRILKNLIMAGYSPEHDVSGVSNPFLQ VKILRLLRVLGTNDTDASETMNDILAQVATNTDTSKNVGHAILYEIVLTIMGIKSESGLRVLAVNILGRFLLNSDKNIRY VALNTLLRVVHADYNAVQRHRTTIMDCLKDPDISIRKRAVELSFALINANNVRGMMKELLSFLENCDPEFKADCCSNIVQ AAESYAPNKRWHIDTVMKVLTTAGSSVREDVVSILIQLIAETNQLHNYTVQQLFKRIEDDVSQQPLVQVASWCIGEYGEK LVSGTCEEDEPVQVSEDEVVDVLEKVLSMNYCEEVTKEYAMNALMKLSSRFRTSIGRIKAVIEKYSSSRNVEIQQRSVEF TCIFKKYDNLSSLYD |
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