Gene
| Gene Model ID | pfu_aug2.0_12.1_06741 |
|---|---|
| Locus | scaffold12.1 : 526841 ... 551745 : + |
| To GenomeBrowser | scaffold12.1:526841..551745 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_4774.1_01814 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glycine receptor subunit alpha-2-like isoform x1 | GO:0005216 GO:0006810 GO:0016020 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06741.t1 | 1 | 1 | Neur_chan_LBD | 43 | 249 | 0.0 | 167.6 | 0.0 | 0.0 | 167.3 |
| pfu_aug2.0_12.1_06741.t1 | 2 | 1 | Neur_chan_memb | 257 | 350 | 2.4e-36 | 125.8 | 4.9e-34 | 3.6e-30 | 105.6 |
| pfu_aug2.0_12.1_06741.t1 | 2 | 2 | Neur_chan_memb | 369 | 397 | 2.4e-36 | 125.8 | 1.1e-08 | 8.4e-05 | 22.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06741.t1 | gi|512888958|ref|XP_004896799.1| | 0.0 | |
| pfu_aug2.0_12.1_06741.t1 | gi|542246970|ref|XP_003455514.2| | PREDICTED: glycine receptor subunit alpha-2 isoformX2 [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06741.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06741.t1 atgctattggagatgagactagcgattcttgtcttgtttcttctattacttatgatggacggagtggcgcattgcaggaa agtttactccaggagagagctgttggagaaggtattggacctccaccatgtatacaatgaaaccctccattcctatgatc ccaagattccacctcattatgatcaagagtatcctacgaacgtttccatgcaacttctaattctgagcatagactcctta cgggaactatcaatggatttttcagtcaacgcatacctgagacaatcatggacagatccaaggctacgatatgacaatat ctctgatgtaaaaaggctggagcttgaccagaaactgttgaacagcgtatgggtgccagacacgttcttctcaaatgaaa aatatgcattcgtacatgatgtcacggtacctaacagacttctacacgtatatagcgacggaagagtcatgtatagcatg agagtatccatgacgttatcctgccagatgaatctgcataattatccacttgatgtacagagatgtccaatagttattga aagctatggctattcaacggacaacgtcctgtttaattggcacgagactcatccagtggaaatcccaaatgttggcttac cacagttttctctcgaaaaacaccctgtgggactctactgtaataaaaaatatgggatgacggggacattctcgtgtttg aatacaacactcacatttagaaggaatcagggttattacttcgcccaaatcttcattccaagcatgctcattgtagccct ctcatgggtctcgttctgggttgaccccgaggccacgccagcccgaatttccttgggtgtattgacagttctcacactta ctacccagacgtctggaacgagagcacagctacccatggtttcctacataaaggcaatagatatttggatgtccacctgc atgatatttgtgttttctgcgttactagagtacgcttatataaacgtcctttcaagaaggaaaaatagaccagtgcgaac aaataaagaatgccaaggagcaatggctaatcctaatcccctgatgcctttcatcaaactgattgactttaaaagagaag caagaaaagttgacagaatatccagaatactgttcccctccatgtttgtatgttttaatattggattttggacattttat tcttatctgaatagagataatgaatttaactag |
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Protein
| Protein ID | pfu_aug2.0_12.1_06741.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06741.t1 MLLEMRLAILVLFLLLLMMDGVAHCRKVYSRRELLEKVLDLHHVYNETLHSYDPKIPPHYDQEYPTNVSMQLLILSIDSL RELSMDFSVNAYLRQSWTDPRLRYDNISDVKRLELDQKLLNSVWVPDTFFSNEKYAFVHDVTVPNRLLHVYSDGRVMYSM RVSMTLSCQMNLHNYPLDVQRCPIVIESYGYSTDNVLFNWHETHPVEIPNVGLPQFSLEKHPVGLYCNKKYGMTGTFSCL NTTLTFRRNQGYYFAQIFIPSMLIVALSWVSFWVDPEATPARISLGVLTVLTLTTQTSGTRAQLPMVSYIKAIDIWMSTC MIFVFSALLEYAYINVLSRRKNRPVRTNKECQGAMANPNPLMPFIKLIDFKREARKVDRISRILFPSMFVCFNIGFWTFY SYLNRDNEFN |
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