Gene
| Gene Model ID | pfu_aug2.0_12.1_06747 |
|---|---|
| Locus | scaffold12.1 : 673727 ... 689233 : + |
| To GenomeBrowser | scaffold12.1:673727..689233 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug1.0_4289.1_59481 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| hippocampus abundant transcript 1 | GO:0005215 GO:0005886 GO:0016021 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_12.1_06747.t1 | 2 | 1 | MFS_1 | 35 | 324 | 1.4e-25 | 89.7 | 2.6e-27 | 1.9e-23 | 82.7 |
| pfu_aug2.0_12.1_06747.t1 | 2 | 2 | MFS_1 | 370 | 472 | 1.4e-25 | 89.7 | 0.00014 | 1.0 | 8.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_12.1_06747.t1 | gi|676422408|ref|XP_009043957.1| | hypothetical protein LOTGIDRAFT_228011 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_12.1_06747.t1 | gi|742089537|ref|XP_010889506.1| | PREDICTED: hippocampus abundant transcript 1 protein-like [Esox lucius] | 0.0 |
| pfu_aug2.0_12.1_06747.t1 | gi|241997924|ref|XP_002433605.1| | hippocampus abundant transcript 1 protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_12.1_06747.t1 | gi|542206408|ref|XP_003448540.2| | PREDICTED: hippocampus abundant transcript 1 protein-like [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_12.1_06747.t1 | gi|632962140|ref|XP_007897144.1| | PREDICTED: hippocampus abundant transcript 1 protein-like [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_12.1_06747.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06747.t1 atgatttcagaatttcatgcttgttccatagaatttgatggcgttacaattactttacgtcagcaaacatcagctgttga ccagcccagtgtttatcatgccttagttattattttcctggaattttttgcttgggggttacttacatccccaattatag aggtgctaaatgatacctttcctaaccacacatttttgcttaatgggcttatacagggtgtcaagggaatgctgtcattc ctgagtgccccgttaatcggcgctttatcagacgtatggggcaggaagccattcttactgttgacagtctcattcacctg tctccctatcccattaatgatcattagtcctatgtggtattttgcattgttgtccctatcaggtgtatttgcggtaactt ttagtgttgtatttgcctatgtggctgacataaccactgatgaagacagagggcaggcctatggtctggtctctgccaca tttgcagcgagtcttgttacaagtccagctctaggtttttatttagagaaagtatatagtagtagttttgtggtatggct agccacagctattgcgttgttagacattttatttattctggtggccgtaccggagtcactgccggaaaaattacgccccg ccagctggggatcacagatctcttgggataaagctgatccatttggggcattacggaaaatcggccatgacaagttaata ttattactgtgtataactgtgttcctgtcctacctaccagaggcgggggaatattcttgtttttttgtttatcttcgtct tatcatgcattttacaagaggagaggttgcatcttatatagcattagttggtgttctgtcagttgttgctcaaactttga ttttagctttactattaaagtaccttggtcataaaggatccattatgtatggtctagtgtttgaaattgtacaactagcc tgttatggatttggctcgcaggactgacttccagggatggttaggcaatatcagactcaacccaatgaaggtcagggtca ccttcaaggtcaaggtcacacatttaaggtcaaacatgcaaaaggcgacatacctgttcatgaccagtcaagaggtgtcg cacaaggagtaataaccggtataagagggttgtgtaacggtctaggaccagctctgttcggcttcatcttcttcttattt cacgtcgatttagacatcgacacaacagacccagatgctatggccagccatactaatagcagtagtagtacctatctaat gttacagacagctatacgtagtgttgtaccaggcccaccttttgcattcggagctattctagtcataatggccttgttag tggccatcttcatgcctgaaaatcctcactcaaacctaggaaagtcaaaaagaaacaatactgtgatgttagaggcattt cacccagaaacaagccatgtggtggaagccgaacctttaattacagagagtagtcaaaacttatag |
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Protein
| Protein ID | pfu_aug2.0_12.1_06747.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_12.1_06747.t1 MISEFHACSIEFDGVTITLRQQTSAVDQPSVYHALVIIFLEFFAWGLLTSPIIEVLNDTFPNHTFLLNGLIQGVKGMLSF LSAPLIGALSDVWGRKPFLLLTVSFTCLPIPLMIISPMWYFALLSLSGVFAVTFSVVFAYVADITTDEDRGQAYGLVSAT FAASLVTSPALGFYLEKVYSSSFVVWLATAIALLDILFILVAVPESLPEKLRPASWGSQISWDKADPFGALRKIGHDKLI LLLCITVFLSYLPEAGEYSCFFVYLRLIMHFTRGEVASYIALVGVLSVVAQTLILALLLKYLGHKGSIMYGLVFEIVQLA CYGFGSQDXLPGMVRQYQTQPNEGQGHLQGQGHTFKVKHAKGDIPVHDQSRGVAQGVITGIRGLCNGLGPALFGFIFFLF HVDLDIDTTDPDAMASHTNSSSSTYLMLQTAIRSVVPGPPFAFGAILVIMALLVAIFMPENPHSNLGKSKRNNTVMLEAF HPETSHVVEAEPLITESSQNL |
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