Gene
| Gene Model ID | pfu_aug2.0_1204.1_14868 |
|---|---|
| Locus | scaffold1204.1 : 71236 ... 81268 : + |
| To GenomeBrowser | scaffold1204.1:71236..81268 |
| Genes list of scaffold | scaffold1204.1 |
| Synonym | pfu_aug1.0_2115.1_51525 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1204.1_14868.t1 | 2 | 1 | zf-B_box | 14 | 57 | 1.7e-10 | 40.5 | 2.0e-07 | 0.00049 | 19.9 |
| pfu_aug2.0_1204.1_14868.t1 | 2 | 2 | zf-B_box | 74 | 112 | 1.7e-10 | 40.5 | 2.5e-09 | 6.1e-06 | 26.0 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 1 | SGL | 354 | 380 | 8.0e-06 | 25.4 | 0.21 | 520.0 | -0.2 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 2 | SGL | 394 | 430 | 8.0e-06 | 25.4 | 0.00019 | 0.46 | 9.8 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 1 | NHL | 401 | 416 | 5.7e-09 | 35.4 | 0.012 | 30.0 | 4.8 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 2 | NHL | 454 | 471 | 5.7e-09 | 35.4 | 0.3 | 740.0 | 0.4 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 3 | SGL | 491 | 531 | 8.0e-06 | 25.4 | 7.7e-05 | 0.19 | 11.0 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 3 | NHL | 494 | 516 | 5.7e-09 | 35.4 | 1.2e-07 | 0.0003 | 20.6 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 4 | NHL | 537 | 557 | 5.7e-09 | 35.4 | 4.5e-06 | 0.011 | 15.6 |
| pfu_aug2.0_1204.1_14868.t1 | 4 | 4 | SGL | 540 | 558 | 8.0e-06 | 25.4 | 0.49 | 1200.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1204.1_14868.t1 | gi|533149618|ref|XP_005389110.1| | PREDICTED: tripartite motif-containing protein 45 isoform X1 [Chinchilla lanigera] | 7.0e-12 |
| pfu_aug2.0_1204.1_14868.t1 | gi|533149620|ref|XP_005389111.1| | PREDICTED: tripartite motif-containing protein 45 isoform X2 [Chinchilla lanigera] | 8.0e-12 |
| pfu_aug2.0_1204.1_14868.t1 | gi|585721293|ref|XP_006813241.1| | PREDICTED: tripartite motif-containing protein 3-like [Saccoglossus kowalevskii] | 7.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_1204.1_14868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1204.1_14868.t1 atgagtgaccaaggagccaccgcattcccaagccagacaatggtcgaatgtggcatatgcggagagaaattcgacgtgaa ttggttttgcaagaactgtgctggatccatatgtgacaaatgttatcatattcatcggaaaaccgaaatctctagacggc atatagtagtctcaaggactgttgaagtcctcaggctacatggtcctgcaaagattgtcgaaatttgccaataccatcca acaaaagaagtgtcagcgtattgtaatgaatgcaaggtaccttgttgcttactttgtctttcgaacaattatcaacgtca tgtgttttctcctatagaagatatgtatctctctgctgagaaaaatcttgacaagtacgtcagggagcttcaaaaagatg tgaaaccaacattggatgaaatgatgaaaagtttcaaagaacacatagaaagaaatgaagtacagatagaaaaagtgaaa gcagagataaatatatttaaacaaactctcatacagagagtagttgaatcatgtgatttgcttttgaaagaaatcgatca agttaaagatgatggcagatattttgtgaatgaacttcgggccagtaaagacaaacgagatcatttgatgaaagatatag taaccattataggggtgggaaaactagacatcatagaatattccccaccggaccaaaagtctttcatcaaaaaccctcca ttgcataatctaacattaccaagatttgtccctagaaattatttcattgatttgatagaaaaaaagatagaaatagggaa aatcgagtttgataaagaaatcaccaagatgcagaaaaaatcttcaacgcggccaaaagatattctaaatgaaaagatat cttcctctccggtcagttgtattgacaaacctgacatcagtgttttaaaggtcagatcgtttaaaagtaaaacggttctt acctcccttaccactgctggcaataactcatcatgggttatgtctgaacttggtaatacaatgtacctgtatcgaaataa tggacaattgataaggtcagctgaggtaaagatcagtcacggcatcaatgatatggtcatctcaaggtcaggggatatga tactggcttgtcatgataacaaagtaagacgtttatcagtaggtggtagggttgttacactgataaacactaaaccttac aggcctgaaggtatgtgtttgactgatagtgatgaggtggttgtgtgtctcagagggagggaagtggctgtttactcccc tgatggacgtagtaagctacgtgagataaggggagaggacagtcagggtacaccacaaatatccgatccatatcgtgtgg tttgtaatggtaaggatctgtgtgtggttgatggagatagtaatgtagtatgcgtagacgacagtgataatgttaggtgg atctatgatgataagcaggttaagctgatgaagaaattttatccacttggtatatgtgtagacaagtaccaccatttgct agtcacagattacaacaaacactgtgtacattacttgaacagggagggggagcttatacaggtcatactgacacaggaac agacagggttaaggtggccatgggggatcagtgtagatgatgagacaggccaggtgtgggtcggtaataattcaggtgat gttaacgtagttatcgcgaaatacttgaagtaa |
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Protein
| Protein ID | pfu_aug2.0_1204.1_14868.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1204.1_14868.t1 MSDQGATAFPSQTMVECGICGEKFDVNWFCKNCAGSICDKCYHIHRKTEISRRHIVVSRTVEVLRLHGPAKIVEICQYHP TKEVSAYCNECKVPCCLLCLSNNYQRHVFSPIEDMYLSAEKNLDKYVRELQKDVKPTLDEMMKSFKEHIERNEVQIEKVK AEINIFKQTLIQRVVESCDLLLKEIDQVKDDGRYFVNELRASKDKRDHLMKDIVTIIGVGKLDIIEYSPPDQKSFIKNPP LHNLTLPRFVPRNYFIDLIEKKIEIGKIEFDKEITKMQKKSSTRPKDILNEKISSSPVSCIDKPDISVLKVRSFKSKTVL TSLTTAGNNSSWVMSELGNTMYLYRNNGQLIRSAEVKISHGINDMVISRSGDMILACHDNKVRRLSVGGRVVTLINTKPY RPEGMCLTDSDEVVVCLRGREVAVYSPDGRSKLREIRGEDSQGTPQISDPYRVVCNGKDLCVVDGDSNVVCVDDSDNVRW IYDDKQVKLMKKFYPLGICVDKYHHLLVTDYNKHCVHYLNREGELIQVILTQEQTGLRWPWGISVDDETGQVWVGNNSGD VNVVIAKYLK |
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