Gene
| Gene Model ID | pfu_aug2.0_121.1_03655 |
|---|---|
| Locus | scaffold121.1 : 16604 ... 42735 : - |
| To GenomeBrowser | scaffold121.1:16604..42735 |
| Genes list of scaffold | scaffold121.1 |
| Synonym | pfu_aug1.0_4078.1_52176 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase mib2-like | GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_121.1_03655.t1 | 3 | 1 | MIB_HERC2 | 4 | 72 | 0.0 | 190.6 | 5.2e-34 | 1.9e-30 | 104.6 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 1 | ZZ | 78 | 113 | 1.1e-10 | 40.9 | 2.9e-14 | 1.1e-10 | 40.9 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 1 | zf-C3HC4_3 | 82 | 102 | 2.0e-09 | 36.9 | 0.081 | 300.0 | 1.1 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 2 | MIB_HERC2 | 155 | 219 | 0.0 | 190.6 | 2.5e-29 | 9.2e-26 | 89.6 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 3 | MIB_HERC2 | 248 | 262 | 0.0 | 190.6 | 0.14 | 530.0 | 0.6 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 2 | ZZ | 394 | 423 | 1.1e-10 | 40.9 | 3.2 | 12000.0 | -4.1 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 2 | zf-C3HC4_3 | 396 | 438 | 2.0e-09 | 36.9 | 3.7e-12 | 1.4e-08 | 34.2 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 3 | zf-C3HC4_3 | 473 | 496 | 2.0e-09 | 36.9 | 1.3e-06 | 0.0049 | 16.5 |
| pfu_aug2.0_121.1_03655.t1 | 3 | 3 | ZZ | 475 | 480 | 1.1e-10 | 40.9 | 2.4 | 8800.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_121.1_03655.t1 | gi|291232869|ref|XP_002736376.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2-like, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_121.1_03655.t1 | gi|573908651|ref|XP_006642044.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_121.1_03655.t1 | gi|617455595|ref|XP_007570163.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Poecilia formosa] | 0.0 |
| pfu_aug2.0_121.1_03655.t1 | gi|597750446|ref|XP_007237140.1| | PREDICTED: E3 ubiquitin-protein ligase MIB2-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_121.1_03655.t1 | gi|190337136|gb|AAI63627.1| | Mib2 protein [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_121.1_03655.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_121.1_03655.t1 atggaagttgggctgcgggttgttcgagggccagattggaaatggggtaaccaagacgacggagaggggcatgtgggaac tgttgtagaaattggcaagccagggagctctacctcccctgataaaacagtagtcgttcaatgggactcagggtcacgga caaattacagagttggttaccaaggagcctatgacctccgtatccttgacaacgctccaataggtgtgaaacatcctaac attatctgtgatgcctgtaaacgtcaggggatacaaggaatgagatggaaatgtaccaaatgtcacgactttgacctctg tacgtcatgttatatgtcagacaaacataatctggcccatgcttttttaagatttgagtcgtcatcttcaaaaggagtaa aagttcccaagagacaagaccttgttaacagcagtaagttgtcatcgtacggtatatttactggagctcgtgttgtgagg ggaccggactgggactggggtaatcaggatggaggagaaggtaaagtagggcgtgtgacagatatcaggggttgggatgc ggaatctggtcgtagcgtagctcatgtcacttggcagacgtcctctactaacgtgtacagagtggggcataaagggaaag tagacctcaagtacattatgccggcaaaaggaccagagtactataaggaacatctacctgttttgggtgagttcacagac agtgtgaatgccggcacgatacagaatcaatttagagttggtgataaagtgagagtagatctagaggcagagatactgaa agcgatgcaggaaggtcacgggggatggaatccacgtatgtcagaggtgcatttgtttgccattaatgacatcgttaaaa tatcagagagtatacacctagtcaaagaattacagaaagggcatggagaatggacagataacatgaaaatgattcgggac cagctaggtttgttagacgatgatgaccagatgtctgcggccctcgcgtgctatctagctcaacaaggggccagtctgaa ccataagaatcaccaggggaaaactccgctagatgtcatcaccgaccctaaaatagaagacaaagtcagacagtttgcta caactcaagcacacggtaatgttccgagtctgcgatccagtagcctgaaggtagagcatgagctgacagagtgtctggtg tgctcagacaacatggccaccgtcaaagtagagccgtgcggacactacgctgcctgtagagaatgtgtcattaaaatgaa gaggtgcatcatctgcagagaaattattgaaaacaaaatcttaccagattctacaaaagcaggtcaaaacaacttaagtg aggagtcatcaagcactccgtcattcttagaaagacgtctgcaggagattgaagaaaatacactgtgtacaatttgtatg gagaggaagaaggacacagccttcttgtgtggacacactgtttgttcgataaaaccaaatgtcatatga |
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Protein
| Protein ID | pfu_aug2.0_121.1_03655.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_121.1_03655.t1 MEVGLRVVRGPDWKWGNQDDGEGHVGTVVEIGKPGSSTSPDKTVVVQWDSGSRTNYRVGYQGAYDLRILDNAPIGVKHPN IICDACKRQGIQGMRWKCTKCHDFDLCTSCYMSDKHNLAHAFLRFESSSSKGVKVPKRQDLVNSSKLSSYGIFTGARVVR GPDWDWGNQDGGEGKVGRVTDIRGWDAESGRSVAHVTWQTSSTNVYRVGHKGKVDLKYIMPAKGPEYYKEHLPVLGEFTD SVNAGTIQNQFRVGDKVRVDLEAEILKAMQEGHGGWNPRMSEVHLFAINDIVKISESIHLVKELQKGHGEWTDNMKMIRD QLGLLDDDDQMSAALACYLAQQGASLNHKNHQGKTPLDVITDPKIEDKVRQFATTQAHGNVPSLRSSSLKVEHELTECLV CSDNMATVKVEPCGHYAACRECVIKMKRCIICREIIENKILPDSTKAGQNNLSEESSSTPSFLERRLQEIEENTLCTICM ERKKDTAFLCGHTVCSIKPNVI |
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