Gene
| Gene Model ID | pfu_aug2.0_1211.1_04889 |
|---|---|
| Locus | scaffold1211.1 : 100532 ... 112545 : - |
| To GenomeBrowser | scaffold1211.1:100532..112545 |
| Genes list of scaffold | scaffold1211.1 |
| Synonym | pfu_aug1.0_9880.1_53441 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s14 | GO:0000028 GO:0000122 GO:0000184 GO:0003735 GO:0005730 GO:0005739 GO:0005925 GO:0006413 GO:0006414 GO:0006415 GO:0006417 GO:0006614 GO:0016020 GO:0016787 GO:0019083 GO:0022627 GO:0030490 GO:0043009 GO:0045182 GO:0048027 GO:0048821 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1211.1_04889.t2 | 1 | 1 | Ribosomal_S11 | 52 | 170 | 1.6e-40 | 137.6 | 1.68156e-44 | 2.5e-40 | 137.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1211.1_04889.t2 | gi|625207767|ref|XP_007645016.1| | PREDICTED: 40S ribosomal protein S14 isoform X1 [Cricetulus griseus] | 0.0 |
| pfu_aug2.0_1211.1_04889.t2 | gi|499009542|ref|XP_004556988.1| | PREDICTED: 40S ribosomal protein S14 [Maylandia zebra] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1211.1_04889.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1211.1_04889.t1 atggcaccccgaaaaggcaagaaggaacaggtagaacaagttagccttggaccacaggtcaaggagggggaaaatgtgtt tggtgtagcacatatttttgccagtttcaatgacacctttgtccatgtcacagatctctctggcaaagagacaattgccc gtattactggaggtatgaaggtcaaggctgatcgtgatgaggcttcaccgtatgccgctatgttggcagcccaagatgtg gcggaaaaatgtaagaccctcggaataaatgccctccacatcaagcttagagccactggtggaaacaggaccaagacacc tggaccaggggcacagtcagcactcagagccttggcccgatcaggaatgaaaattggtagaatcgaggatgtgacgccca ttccctctgacagcaccagaaggaagggaggaagacgtggacgtcgtttgtaa |
|
| Transcript ID | pfu_aug2.0_1211.1_04889.t2 |
| Definition | - |
>pfu_aug2.0_1211.1_04889.t2 atgaaagatatgagaaagcaaagagtcggtttaagacgtagaccaacgttggaagtcgtgattcggcagtccatggcacc ccgaaaaggcaagaaggaacaggtagaacaagttagccttggaccacaggtcaaggagggggaaaatgtgtttggtgtag cacatatttttgccagtttcaatgacacctttgtccatgtcacagatctctctggcaaagagacaattgcccgtattact ggaggtatgaaggtcaaggctgatcgtgatgaggcttcaccgtatgccgctatgttggcagcccaagatgtggcggaaaa atgtaagaccctcggaataaatgccctccacatcaagcttagagccactggtggaaacaggaccaagacacctggaccag gggcacagtcagcactcagagccttggcccgatcaggaatgaaaattggtagaatcgaggatgtgacgcccattccctct gacagcaccagaaggaagggaggaagacgtggacgtcgtttgtaa |
|
Protein
| Protein ID | pfu_aug2.0_1211.1_04889.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1211.1_04889.t1 MAPRKGKKEQVEQVSLGPQVKEGENVFGVAHIFASFNDTFVHVTDLSGKETIARITGGMKVKADRDEASPYAAMLAAQDV AEKCKTLGINALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL |
|
| Protein ID | pfu_aug2.0_1211.1_04889.t2 |
| Definition | - |
>pfu_aug2.0_1211.1_04889.t2 MKDMRKQRVGLRRRPTLEVVIRQSMAPRKGKKEQVEQVSLGPQVKEGENVFGVAHIFASFNDTFVHVTDLSGKETIARIT GGMKVKADRDEASPYAAMLAAQDVAEKCKTLGINALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPS DSTRRKGGRRGRRL |
|