Gene
Gene Model ID | pfu_aug2.0_1214.1_14873 |
---|---|
Locus | scaffold1214.1 : 12156 ... 13241 : + |
To GenomeBrowser | scaffold1214.1:12156..13241 |
Genes list of scaffold | scaffold1214.1 |
Synonym | pfu_aug1.0_5741.1_67318 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1214.1_14873.t1 | 2 | 1 | zf-B_box | 15 | 54 | 1.2e-13 | 50.6 | 1.5e-09 | 5.4e-06 | 26.1 |
pfu_aug2.0_1214.1_14873.t1 | 2 | 2 | zf-B_box | 68 | 107 | 1.2e-13 | 50.6 | 7.7e-11 | 2.9e-07 | 30.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1214.1_14873.t1 | gi|395535760|ref|XP_003769889.1| | 1.0e-11 | |
pfu_aug2.0_1214.1_14873.t1 | gi|597772253|ref|XP_007249891.1| | PREDICTED: uncharacterized protein LOC103036879 [Astyanax mexicanus] | 6.0e-11 |
pfu_aug2.0_1214.1_14873.t1 | gi|195569415|ref|XP_002102705.1| | GD19361 [Drosophila simulans] | 2.0e-10 |
pfu_aug2.0_1214.1_14873.t1 | gi|499005706|ref|XP_004535645.1| | 2.0e-10 |
Transcript
Transcript ID | pfu_aug2.0_1214.1_14873.t1 |
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Definition | - |
>pfu_aug2.0_1214.1_14873.t1 atggcgactgttcaccaaggaccgatattacatcagacttatgtagaatgtgatggatgtgaggacgacaatgaagtaga atggtactgtatatcatgtaaaagtaacctatgtggaagctgcaagaccgcccgcttacacaggaagcacatccttaaac catggaaggatccagaggcagtgagtgctcggcaagacgccccaatgccgtgtaaggtacatccagataaaacctatgtc aactattgcacagactgcgacgttctctgctgctcagcatgtaacgcaggagatcatactggccaccatttcaaaacaat tgaagatatcattggcgaaaaacgcactgctttgatgaactttattgatgaactgaaaggaaattgtacatcgaaggcaa aagaaaagagggaaaaattagcagggattaaagagaagagtatctttcgttgcagcatgaataagaagaaaattaaagaa aaaattgattccctaaggaaagatttatcggtaatggaagataaactcatgaaagaagaggacaccattgaatacgaaaa tgtttcgactttggagaaggacattttggaggttaagaaaaaagaagacaaaattactgaaaccatcgaggatatagaac aggaactgtcattttctagcaaccaaagcatcatccaaaaatcactatcatctttaagtttggaaggttttaaagtacaa gacaccgatcgattgcctaccaacgaattcgaagtgagcgactttaaatttccaagtactacagatacaattggatcacg agaaaagaggtttgataaacttttttcatga |
Protein
Protein ID | pfu_aug2.0_1214.1_14873.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1214.1_14873.t1 MATVHQGPILHQTYVECDGCEDDNEVEWYCISCKSNLCGSCKTARLHRKHILKPWKDPEAVSARQDAPMPCKVHPDKTYV NYCTDCDVLCCSACNAGDHTGHHFKTIEDIIGEKRTALMNFIDELKGNCTSKAKEKREKLAGIKEKSIFRCSMNKKKIKE KIDSLRKDLSVMEDKLMKEEDTIEYENVSTLEKDILEVKKKEDKITETIEDIEQELSFSSNQSIIQKSLSSLSLEGFKVQ DTDRLPTNEFEVSDFKFPSTTDTIGSREKRFDKLFS |