Gene
| Gene Model ID | pfu_aug2.0_1218.1_28126 |
|---|---|
| Locus | scaffold1218.1 : 26853 ... 43455 : - |
| To GenomeBrowser | scaffold1218.1:26853..43455 |
| Genes list of scaffold | scaffold1218.1 |
| Synonym | pfu_aug1.0_5688.1_31019 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1218.1_28126.t1 | 1 | 1 | FERM_N | 9 | 62 | 1.2e-09 | 38.0 | 1.8e-12 | 3.3e-09 | 36.6 |
| pfu_aug2.0_1218.1_28126.t1 | 1 | 1 | FERM_M | 63 | 174 | 3.1e-06 | 27.3 | 4.9e-09 | 9.1e-06 | 25.8 |
| pfu_aug2.0_1218.1_28126.t1 | 1 | 1 | zf-C3HC4_3 | 420 | 461 | 2.0e-10 | 40.1 | 2.8e-13 | 5.2e-10 | 38.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1218.1_28126.t1 | gi|676456305|ref|XP_009054281.1| | hypothetical protein LOTGIDRAFT_206409 [Lottia gigantea] | 1.4013e-45 |
| pfu_aug2.0_1218.1_28126.t1 | gi|260834881|ref|XP_002612438.1| | hypothetical protein BRAFLDRAFT_114257 [Branchiostoma floridae] | 9.94922e-44 |
| pfu_aug2.0_1218.1_28126.t1 | gi|557000239|ref|XP_006002928.1| | PREDICTED: E3 ubiquitin-protein ligase MYLIP isoform X2 [Latimeria chalumnae] | 1.99965e-42 |
| pfu_aug2.0_1218.1_28126.t1 | gi|557000237|ref|XP_006002927.1| | PREDICTED: E3 ubiquitin-protein ligase MYLIP isoform X1 [Latimeria chalumnae] | 3.99931e-42 |
| pfu_aug2.0_1218.1_28126.t1 | gi|597774364|ref|XP_007250902.1| | PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MYLIP-B-like [Astyanax mexicanus] | 3.99931e-42 |
Transcript
| Transcript ID | pfu_aug2.0_1218.1_28126.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1218.1_28126.t1 atgagtcaaggatttgggtgtccaaaggtgtgtgagattcttggaacaatagagaaggactactttggtctgcagtacca gggaccaaagggggaacaactctggctcaacatgaggaacaggatagatcgtcagcatccaggtccccagccttacagat tccaactgagagtcaagttctacgtacatcctcatatgcttcaacaagaaactaccagacatcagttttacctgcagcta aagcatgagttacagacgaagaccctgaatgtatcagacaatgaccagctggccttgattttggccttgatgacccaagc cgaatacggtgaccagatcaacgatgtccggcaatttgacctataccagtcagttatgaacgggatagagatgccctctc acgacatgctgaccagtattgccctccatcactccaagctacgtcaaaagtccagggtttgttcagagtatcagatggtc caggaggtggcgaaactacagaattatgggaccgagttccacaaggcggtgctggaagggggagaggctgcacaagtagg ggtggggcctgatggagtgtttgtgtaccgtgtctgtcaggatagcattgaccagaaacctagaatcgaannnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaaacaaaatatccata tgccattgtcaaaagtgccatacatgatggaaggaagtgtaaattgtattatttcggagaagatggagaggagaagcatg aggagttccgattggtcagcaacaaagcctcggttgctctgtataggtgtataacggaaatgcattccttctttaatagt gatacgataaacaatgaggtgttccaacagaggacacaagacctcaaagatttccttgcctctattttccgcagtgatgt agggagtcagaattacgttttcgacgttcagcacactagcagagaggtgtatgatagcacaagaaggcaactattgaagt cacaaggaaatgtcttgtccctacctaacaattccaacaatgttaacacaggaagttgtgaattcggtcaccattcgtca gatatggatctagaatgccagaaacttaaggagcggatcgagaagcttgaagagtcttttgtttgccgggtatgcatgga ccgtaacatatcaactgttttatgcccatgtggtcacatgatctgctgcgtctgcgcaaaacagcttacagactgtccgt tatgtaggactatgatagataacacccagacagtttatatctccgcgccagtaatcaacatgacgtag |
|
Protein
| Protein ID | pfu_aug2.0_1218.1_28126.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1218.1_28126.t1 MSQGFGCPKVCEILGTIEKDYFGLQYQGPKGEQLWLNMRNRIDRQHPGPQPYRFQLRVKFYVHPHMLQQETTRHQFYLQL KHELQTKTLNVSDNDQLALILALMTQAEYGDQINDVRQFDLYQSVMNGIEMPSHDMLTSIALHHSKLRQKSRVCSEYQMV QEVAKLQNYGTEFHKAVLEGGEAAQVGVGPDGVFVYRVCQDSIDQKPRIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXLKTKYPYAIVKSAIHDGRKCKLYYFGEDGEEKHEEFRLVSNKASVALYRCITEMHSFFNS DTINNEVFQQRTQDLKDFLASIFRSDVGSQNYVFDVQHTSREVYDSTRRQLLKSQGNVLSLPNNSNNVNTGSCEFGHHSS DMDLECQKLKERIEKLEESFVCRVCMDRNISTVLCPCGHMICCVCAKQLTDCPLCRTMIDNTQTVYISAPVINMT |
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