Gene
| Gene Model ID | pfu_aug2.0_1218.1_28131 |
|---|---|
| Locus | scaffold1218.1 : 86222 ... 116385 : - |
| To GenomeBrowser | scaffold1218.1:86222..116385 |
| Genes list of scaffold | scaffold1218.1 |
| Synonym | pfu_aug1.0_3472.1_37608 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1218.1_28131.t2 | 2 | 1 | Pep_M12B_propep | 17 | 136 | 3.8e-11 | 42.9 | 1.1e-13 | 1.6e-10 | 40.8 |
| pfu_aug2.0_1218.1_28131.t2 | 2 | 2 | Pep_M12B_propep | 184 | 204 | 3.8e-11 | 42.9 | 0.64 | 950.0 | -0.5 |
| pfu_aug2.0_1218.1_28131.t2 | 2 | 1 | Reprolysin_5 | 271 | 447 | 2.0e-14 | 54.0 | 1.3e-17 | 2.0e-14 | 54.0 |
| pfu_aug2.0_1218.1_28131.t2 | 1 | 1 | Reprolysin_4 | 272 | 466 | 1.5e-08 | 34.4 | 2.4e-11 | 3.6e-08 | 33.2 |
| pfu_aug2.0_1218.1_28131.t2 | 1 | 1 | Reprolysin | 272 | 477 | 5.5e-32 | 110.9 | 6.6e-35 | 9.8e-32 | 110.1 |
| pfu_aug2.0_1218.1_28131.t2 | 1 | 1 | Reprolysin_2 | 292 | 459 | 5.5e-08 | 33.0 | 7.3e-11 | 1.1e-07 | 32.0 |
| pfu_aug2.0_1218.1_28131.t2 | 1 | 1 | Reprolysin_3 | 299 | 426 | 3.1e-10 | 40.6 | 3.9e-13 | 5.8e-10 | 39.7 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 1 | TSP_1 | 453 | 458 | 4.4e-09 | 36.3 | 10.0 | 15000.0 | -4.0 |
| pfu_aug2.0_1218.1_28131.t2 | 4 | 1 | PLAC | 507 | 520 | 6.6e-10 | 39.1 | 1.3 | 2000.0 | -0.9 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 2 | TSP_1 | 544 | 563 | 4.4e-09 | 36.3 | 0.23 | 340.0 | 1.4 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 3 | TSP_1 | 570 | 576 | 4.4e-09 | 36.3 | 2.2 | 3300.0 | -1.7 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 4 | TSP_1 | 578 | 600 | 4.4e-09 | 36.3 | 0.011 | 17.0 | 5.6 |
| pfu_aug2.0_1218.1_28131.t2 | 4 | 2 | PLAC | 698 | 709 | 6.6e-10 | 39.1 | 0.75 | 1100.0 | -0.1 |
| pfu_aug2.0_1218.1_28131.t2 | 1 | 1 | ADAM_spacer1 | 707 | 818 | 1.3e-28 | 99.1 | 1.4e-31 | 2.1e-28 | 98.4 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 5 | TSP_1 | 840 | 888 | 4.4e-09 | 36.3 | 0.026 | 39.0 | 4.4 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 6 | TSP_1 | 895 | 933 | 4.4e-09 | 36.3 | 0.00033 | 0.49 | 10.5 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 7 | TSP_1 | 956 | 1009 | 4.4e-09 | 36.3 | 1.6e-07 | 0.00024 | 21.1 |
| pfu_aug2.0_1218.1_28131.t2 | 4 | 3 | PLAC | 992 | 1003 | 6.6e-10 | 39.1 | 6.1 | 9100.0 | -3.0 |
| pfu_aug2.0_1218.1_28131.t2 | 8 | 8 | TSP_1 | 1019 | 1067 | 4.4e-09 | 36.3 | 1.4e-09 | 2.1e-06 | 27.7 |
| pfu_aug2.0_1218.1_28131.t2 | 4 | 4 | PLAC | 1077 | 1109 | 6.6e-10 | 39.1 | 4.4e-13 | 6.6e-10 | 39.1 |
| pfu_aug2.0_1218.1_28131.t2 | 2 | 2 | Reprolysin_5 | 1094 | 1106 | 2.0e-14 | 54.0 | 10.0 | 15000.0 | -6.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1218.1_28131.t2 | gi|395510796|ref|XP_003759656.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 16 [Sarcophilus harrisii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1218.1_28131.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1218.1_28131.t1 atggagttcttcgtacattccttgaaatccagtcatcctgacaccaacattgtgtatcctcatatcatcgattcatccgg gaaatctgtctcacaaaactttcatctccatggcaaccgtttgaagcgtgacgctgatcatcccgcacaaacaaaaactc tctacctcaatatcaccggacacggtcagacgttccaaatagaaatcatatcaaacgataaacttctggcgccaggattc aaagtgtaccacagaaaacaccataaaaggacgttagtagaacaagaagtgatacccgcggacggtgattggatgaattc aaattgccattttagaagtagtttcgaattaaagaatagtcataccgcggcgttgtctctctgcgatggagtgaatggca ttatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcagaagagga ctatatcatagaaccttacgaacgtcataaaatcacgacggagaacgaacatttccacgaacgtccacacaaactggtca agaggtcagctctcaaggtcgaccagaatcattactgtggcaaatcggacagaagaaaaagaagtttaacgcacataagg aatgaaaatgagttgaacaacacgtcacgtgacgtagaccggcgttcccggtttaaatggcggttccagaatgctctaat agagagggaggagaggacggtagagacactggtggtggtggacaagacgctgtatcataaacatggcaaagacaacatta ctacgtataccctcacactgtttaatatggttgctgagctgtacagagacccgagccttggtaacaatatcaacatagtg ttagtgggactcattctactagagggagatgagccaggattgtccatagccttccatgcagacaatactctgaacagttt ctgtacgtggcagtctgtattggtaggggctaacggaagacaacacgatcacgccatactactgactggccttgacctct gctcctataaaaacgctccatgtgacacgctaggttttgctcccattgagggtatgtgtaacagagtacgtagctgtaca ataaacgaggataccggtctctccacagcatttactatcgctcatgagatgggacacaactttggaatgttccatgatgg tgagggtaattactgtactcaatctgctggtaaaatcatgtcgcccacccttgttggcaaaaatggacagttccactggt cgatctgcagtaaagcctacctcatgagattcatgaacactccccagtcagaatgtttgacagacaaaccaaagaaagta gcagagattaagttcccagacaaactaccaggggagctctataatgcagatatacaatgtaaatggcagtttggacgacg tgcaaagctctgcaattatgattttggcaaggatatctgtaagtcactttggtgttatcgagggaggaagagatgtgaga ccaagtttctgccggcagccgagggaacatcatgtggtaatggtatgtggtgccgcaagggtcagtgtgtacgttttggt caggatggtccgagtccaatagatggtggctggtcccagtggtcaccctgacctcagtatgggggaaatccctgctcagg agaggagaaggtttataagatatgtaacgttcagaattgtcctcgaggggaagacgacttctatcaagtacagtgctcct cttacaacgctaaaccattcaggggctggtacctcaaatggcgacctcatcgtaaactgtataacgcaaaagaaccctgc aagctgtactgcatagcagaaacatataactatgtatttactatcaagcatacggccacggacggaatgaagtgtgataa tgataacagtatgtgtgtggacggggtctgtaagcccattggttgtgattggatagtgggatccgatgccttgaatgacg catgtggtgtatgcaagggggataactctacgtgtcgaatcatcaaaggagaatacactgaacaacctaaacataacaca tactttcctgttgccatcttgcctaaaagtgcacgttcaatcaaagtctctgagaagagggtttcctctaactacatcgc tatacgtgacatatttggacattattatctgaacggccagcacagggtgggatggccgggggaatacatgctaggaggag ccaggtttatttataaacgaccgtataacagaccagaaacactggaggggaaaggtccattacaggaagatctggttcta gaggttttagtacaggatagaaaccccggtattcagtacgagtatgccctgcctatcagtattagcaacgatgcagatga gaagaaagaggacacatatacatggagcgtatctgccactccatgtagtgaaccttgtgctggaggaagacatactatca aagcagtctgtcacagaaacctgtatgaagaagtggcgccatctaactgtgacaaggataccaaacctcgatctggcatc ttctcctgtaatgcacagccttgtcctcccagatgggtaccagaggagtggacagaatgctccaggaagtgtggcggtgg taaacaaagacgtaaaatcttctgtcgtcagagaacgtcatcttcagaggataggagagtcagaaagaggcagtgtaaag gaattcctaaaccaatcaaatcacggagatgtaacccacatctctgtccccccaggtggaaagcaggaaaatggtctaag tgctcagtaagttgtggagttggccagcagacacggaaagtcgtttgtcgtgcaagaggaggaaagcggaggtcaaaggt tgtgtcggcatcccagtgtaaggacgatcagcccaagactgtcagacaatgtaaggaaccacgatgtgccgaggacagct ataattggcatctgtcagaatggggcccgtgctcaaaaacctgtgatcgaggattacgtcaccgttacctccaatgtcac cgggagagcttccgaggacgccattttccaaccagaaataaatattgccgcaatatacctcatccgaacataactatgac tgaatcatgtctagtaatgccttgtcagtcttataaacgggaaccgcaatggctgacttcagaatggacgcagtgttctg tgacatgtggtgaaggcgagcaacgaagaaaagttacatgtgtagataccaaaggtcaaagttcatcaggctgtgacctt gaggaacgacctcctgcatccaaggactgcaagttaggaaactgtcctgttaatgaccatgttgtcaaggagaaatgtga agatcaacacaagtggtgccacctggtgccagaacataacgtttgtagccatgatttttatgggaaacagtgctgtaaat cttgtcaaaaacaaagatga |
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| Transcript ID | pfu_aug2.0_1218.1_28131.t2 |
| Definition | - |
>pfu_aug2.0_1218.1_28131.t2 atggagttcttcgtacattccttgaaatccagtcatcctgacaccaacattgtgtatcctcatatcatcgattcatccgg gaaatctgtctcacaaaactttcatctccatggcaaccgtttgaagcgtgacgctgatcatcccgcacaaacaaaaactc tctacctcaatatcaccggacacggtcagacgttccaaatagaaatcatatcaaacgataaacttctggcgccaggattc aaagtgtaccacagaaaacaccataaaaggacgttagtagaacaagaagtgatacccgcggacggtgattggatgaattc aaattgccattttagaagtagtttcgaattaaagaatagtcataccgcggcgttgtctctctgcgatggagtgaatggca ttatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntactgcagaagagga ctatatcatagaaccttacgaacgtcataaaatcacgacggagaacgaacatttccacgaacgtccacacaaactggtca agaggtcagctctcaaggtcgaccagaatcattactgtggcaaatcggacagaagaaaaagaagtttaacgcacataagg aatgaaaatgagttgaacaacacgtcacgtgacgtagaccggcgttcccggtttaaatggcggttccagaatgctctaat agagagggaggagaggacggtagagacactggtggtggtggacaagacgctgtatcataaacatggcaaagacaacatta ctacgtataccctcacactgtttaatatggttgctgagctgtacagagacccgagccttggtaacaatatcaacatagtg ttagtgggactcattctactagagggagatgagccaggattgtccatagccttccatgcagacaatactctgaacagttt ctgtacgtggcagtctgtattggtaggggctaacggaagacaacacgatcacgccatactactgactggccttgacctct gctcctataaaaacgctccatgtgacacgctaggttttgctcccattgagggtatgtgtaacagagtacgtagctgtaca ataaacgaggataccggtctctccacagcatttactatcgctcatgagatgggacacaactttggaatgttccatgatgg tgagggtaattactgtactcaatctgctggtaaaatcatgtcgcccacccttgttggcaaaaatggacagttccactggt cgatctgcagtaaagcctacctcatgagattcatgaacactccccagtcagaatgtttgacagacaaaccaaagaaagta gcagagattaagttcccagacaaactaccaggggagctctataatgcagatatacaatgtaaatggcagtttggacgacg tgcaaagctctgcaattatgattttggcaaggatatctgtaagtcactttggtgttatcgagggaggaagagatgtgaga ccaagtttctgccggcagccgagggaacatcatgtggtaatggtatgtggtgccgcaagggtcagtgtgtacgttttggt caggatggtccgagtccaatagatggtggctggtcccagtggtcaccctgacctcagtatgggggaaatccctgctcagg agaggagaaggtttataagatatgtaacgttcagaattgtcctcgaggggaagacgacttctatcaagtacagtgctcct cttacaacgctaaaccattcaggggctggtacctcaaatggcgacctcatcgtaaactgtataacgcaaaagaaccctgc aagctgtactgcatagcagaaacatataactatgtatttactatcaagcatacggccacggacggaatgaagtgtgataa tgataacagtatgtgtgtggacggggtctgtaagcccattggttgtgattggatagtgggatccgatgccttgaatgacg catgtggtgtatgcaagggggataactctacgtgtcgaatcatcaaaggagaatacactgaacaacctaaacataacaca tactttcctgttgccatcttgcctaaaagtgcacgttcaatcaaagtctctgagaagagggtttcctctaactacatcgc tatacgtgacatatttggacattattatctgaacggccagcacagggtgggatggccgggggaatacatgctaggaggag ccaggtttatttataaacgaccgtataacagaccagaaacactggaggggaaaggtccattacaggaagatctggttcta gaggttttagtacaggatagaaaccccggtattcagtacgagtatgccctgcctatcagtattagcaacgatgcagatga gaagaaagaggacacatatacatggagcgtatctgccactccatgtagtgaaccttgtgctggaggaagacatactatca aagcagtctgtcacagaaacctgtatgaagaagtggcgccatctaactgtgacaaggataccaaacctcgatctggcatc ttctcctgtaatgcacagccttgtcctcccagatgggtaccagaggagtggacagaatgctccaggaagtgtggcggtgg taaacaaagacgtaaaatcttctgtcgtcagagaacgtcatcttcagaggataggagagtcagaaagaggcagtgtaaag gaattcctaaaccaatcaaatcacggagatgtaacccacatctctgtccccccaggtggaaagcaggaaaatggtctaag tgctcagtaagttgtggagttggccagcagacacggaaagtcgtttgtcgtgcaagaggaggaaagcggaggtcaaaggt tgtgtcggcatcccagtgtaaggacgatcagcccaagactgtcagacaatgtaaggaaccacgatgtgccgaggacagct ataattggcatctgtcagaatggggcccgtgttctgtgacatgtggtgaaggcgagcaacgaagaaaagttacatgtgta gataccaaaggtcaaagttcatcaggctgtgaccttgaggaacgacctcctgcatccaaggactgcaagttaggaaactg tcctgttaatgaccatgttgtcaaggagaaatgtgaagatcaacacaagtggtgccacctggtgccagaacataacgttt gtagccatgatttttatgggaaacagtgctgtaaatcttgtcaaaaacaaagatga |
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Protein
| Protein ID | pfu_aug2.0_1218.1_28131.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1218.1_28131.t1 MEFFVHSLKSSHPDTNIVYPHIIDSSGKSVSQNFHLHGNRLKRDADHPAQTKTLYLNITGHGQTFQIEIISNDKLLAPGF KVYHRKHHKRTLVEQEVIPADGDWMNSNCHFRSSFELKNSHTAALSLCDGVNGIIXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTAEEDYIIEPYERHKITTENEHFHERPHKLVKRSALKVDQNHYCGKSDRRKRSLTHIR NENELNNTSRDVDRRSRFKWRFQNALIEREERTVETLVVVDKTLYHKHGKDNITTYTLTLFNMVAELYRDPSLGNNINIV LVGLILLEGDEPGLSIAFHADNTLNSFCTWQSVLVGANGRQHDHAILLTGLDLCSYKNAPCDTLGFAPIEGMCNRVRSCT INEDTGLSTAFTIAHEMGHNFGMFHDGEGNYCTQSAGKIMSPTLVGKNGQFHWSICSKAYLMRFMNTPQSECLTDKPKKV AEIKFPDKLPGELYNADIQCKWQFGRRAKLCNYDFGKDICKSLWCYRGRKRCETKFLPAAEGTSCGNGMWCRKGQCVRFG QDGPSPIDGGWSQWSPXPQYGGNPCSGEEKVYKICNVQNCPRGEDDFYQVQCSSYNAKPFRGWYLKWRPHRKLYNAKEPC KLYCIAETYNYVFTIKHTATDGMKCDNDNSMCVDGVCKPIGCDWIVGSDALNDACGVCKGDNSTCRIIKGEYTEQPKHNT YFPVAILPKSARSIKVSEKRVSSNYIAIRDIFGHYYLNGQHRVGWPGEYMLGGARFIYKRPYNRPETLEGKGPLQEDLVL EVLVQDRNPGIQYEYALPISISNDADEKKEDTYTWSVSATPCSEPCAGGRHTIKAVCHRNLYEEVAPSNCDKDTKPRSGI FSCNAQPCPPRWVPEEWTECSRKCGGGKQRRKIFCRQRTSSSEDRRVRKRQCKGIPKPIKSRRCNPHLCPPRWKAGKWSK CSVSCGVGQQTRKVVCRARGGKRRSKVVSASQCKDDQPKTVRQCKEPRCAEDSYNWHLSEWGPCSKTCDRGLRHRYLQCH RESFRGRHFPTRNKYCRNIPHPNITMTESCLVMPCQSYKREPQWLTSEWTQCSVTCGEGEQRRKVTCVDTKGQSSSGCDL EERPPASKDCKLGNCPVNDHVVKEKCEDQHKWCHLVPEHNVCSHDFYGKQCCKSCQKQR |
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| Protein ID | pfu_aug2.0_1218.1_28131.t2 |
| Definition | - |
>pfu_aug2.0_1218.1_28131.t2 MEFFVHSLKSSHPDTNIVYPHIIDSSGKSVSQNFHLHGNRLKRDADHPAQTKTLYLNITGHGQTFQIEIISNDKLLAPGF KVYHRKHHKRTLVEQEVIPADGDWMNSNCHFRSSFELKNSHTAALSLCDGVNGIIXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTAEEDYIIEPYERHKITTENEHFHERPHKLVKRSALKVDQNHYCGKSDRRKRSLTHIR NENELNNTSRDVDRRSRFKWRFQNALIEREERTVETLVVVDKTLYHKHGKDNITTYTLTLFNMVAELYRDPSLGNNINIV LVGLILLEGDEPGLSIAFHADNTLNSFCTWQSVLVGANGRQHDHAILLTGLDLCSYKNAPCDTLGFAPIEGMCNRVRSCT INEDTGLSTAFTIAHEMGHNFGMFHDGEGNYCTQSAGKIMSPTLVGKNGQFHWSICSKAYLMRFMNTPQSECLTDKPKKV AEIKFPDKLPGELYNADIQCKWQFGRRAKLCNYDFGKDICKSLWCYRGRKRCETKFLPAAEGTSCGNGMWCRKGQCVRFG QDGPSPIDGGWSQWSPXPQYGGNPCSGEEKVYKICNVQNCPRGEDDFYQVQCSSYNAKPFRGWYLKWRPHRKLYNAKEPC KLYCIAETYNYVFTIKHTATDGMKCDNDNSMCVDGVCKPIGCDWIVGSDALNDACGVCKGDNSTCRIIKGEYTEQPKHNT YFPVAILPKSARSIKVSEKRVSSNYIAIRDIFGHYYLNGQHRVGWPGEYMLGGARFIYKRPYNRPETLEGKGPLQEDLVL EVLVQDRNPGIQYEYALPISISNDADEKKEDTYTWSVSATPCSEPCAGGRHTIKAVCHRNLYEEVAPSNCDKDTKPRSGI FSCNAQPCPPRWVPEEWTECSRKCGGGKQRRKIFCRQRTSSSEDRRVRKRQCKGIPKPIKSRRCNPHLCPPRWKAGKWSK CSVSCGVGQQTRKVVCRARGGKRRSKVVSASQCKDDQPKTVRQCKEPRCAEDSYNWHLSEWGPCSVTCGEGEQRRKVTCV DTKGQSSSGCDLEERPPASKDCKLGNCPVNDHVVKEKCEDQHKWCHLVPEHNVCSHDFYGKQCCKSCQKQR |
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