Gene
| Gene Model ID | pfu_aug2.0_122.1_06978 |
|---|---|
| Locus | scaffold122.1 : 42714 ... 48185 : - |
| To GenomeBrowser | scaffold122.1:42714..48185 |
| Genes list of scaffold | scaffold122.1 |
| Synonym | pfu_aug1.0_11916.1_39261 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ubiquitin family protein | GO:0002020 GO:0005634 GO:0005737 GO:0010992 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | Rad60-SLD | 1 | 71 | 6.00036e-42 | 141.1 | 2.9e-23 | 2.8e-20 | 71.7 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | Telomere_Sde2 | 1 | 76 | 2.1e-10 | 40.5 | 7.3e-07 | 0.00072 | 19.2 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | ubiquitin | 6 | 74 | 0.0 | 235.8 | 3.4e-38 | 3.3e-35 | 119.2 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | TUG-UBL1 | 9 | 52 | 5.4e-06 | 26.2 | 0.00011 | 0.11 | 12.3 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | Rad60-SLD_2 | 10 | 71 | 9.6e-08 | 31.9 | 2.4e-05 | 0.024 | 14.5 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | Ubiquitin_2 | 11 | 69 | 9.1e-15 | 54.6 | 1.0e-08 | 1.0e-05 | 25.6 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 1 | DUF2407 | 13 | 59 | 1.9e-06 | 27.9 | 6.6e-05 | 0.065 | 13.4 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | Rad60-SLD | 77 | 147 | 6.00036e-42 | 141.1 | 2.9e-23 | 2.8e-20 | 71.7 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | Telomere_Sde2 | 77 | 152 | 2.1e-10 | 40.5 | 6.1e-07 | 0.0006 | 19.5 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | ubiquitin | 82 | 150 | 0.0 | 235.8 | 3.4e-38 | 3.3e-35 | 119.2 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | TUG-UBL1 | 85 | 128 | 5.4e-06 | 26.2 | 0.00011 | 0.11 | 12.3 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | Rad60-SLD_2 | 86 | 147 | 9.6e-08 | 31.9 | 2.2e-05 | 0.022 | 14.6 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | Ubiquitin_2 | 87 | 145 | 9.1e-15 | 54.6 | 1.0e-08 | 1.0e-05 | 25.6 |
| pfu_aug2.0_122.1_06978.t1 | 2 | 2 | DUF2407 | 89 | 134 | 1.9e-06 | 27.9 | 8.7e-05 | 0.087 | 13.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_122.1_06978.t1 | gi|697888442|ref|XP_009689464.1| | ubiquitin [Theileria orientalis strain Shintoku] | 0.0 |
| pfu_aug2.0_122.1_06978.t1 | gi|14250448|gb|AAH08661.1| | Ubc protein [Mus musculus] | 0.0 |
| pfu_aug2.0_122.1_06978.t1 | gi|657548090|ref|XP_008278997.1| | PREDICTED: polyubiquitin [Stegastes partitus] | 0.0 |
| pfu_aug2.0_122.1_06978.t1 | gi|602672239|ref|XP_007441627.1| | PREDICTED: polyubiquitin-C-like [Python bivittatus] | 0.0 |
| pfu_aug2.0_122.1_06978.t1 | gi|675745098|ref|XP_008969367.1| | PREDICTED: polyubiquitin-C [Pan paniscus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_122.1_06978.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_122.1_06978.t1 atgcagatttttgtgaagaccctgacaggcaagaccatcacgttggaagtagaaccctctgacaccattgagaatgtcaa ggccaagatccaggataaggagggaattcccccagaccaacagagattgatctttgctggtaaacagttggaggacggaa gaacactgtcagactataacatccagaaggagtccacactccatcttgtacttcgtctccgaggaggtatgcagattttt gtgaagactctgacaggcaagaccatcaccttggaagtagaaccctctgacaccattgagaatgtcaaggccaagatcca ggataaggagggaattcccccagaccaacagagattgatctttgctggtaaacagttggaggacggaagaacactgtcag actataacatccagaaggagtccacactccatcttgtacttcgtctcagaggaggactgtaa |
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Protein
| Protein ID | pfu_aug2.0_122.1_06978.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_122.1_06978.t1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL |
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