Gene
| Gene Model ID | pfu_aug2.0_122.1_06981 |
|---|---|
| Locus | scaffold122.1 : 207553 ... 224569 : - |
| To GenomeBrowser | scaffold122.1:207553..224569 |
| Genes list of scaffold | scaffold122.1 |
| Synonym | pfu_aug1.0_236.1_65317 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna topoisomerase 3-beta-1 | GO:0003677 GO:0003917 GO:0006265 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_122.1_06981.t1 | 1 | 1 | Toprim | 4 | 154 | 4.3e-18 | 65.1 | 2.0e-21 | 1.0e-17 | 63.9 |
| pfu_aug2.0_122.1_06981.t1 | 1 | 1 | Topoisom_bac | 169 | 582 | 0.0 | 336.3 | 0.0 | 0.0 | 335.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_122.1_06981.t1 | gi|524902417|ref|XP_005107460.1| | PREDICTED: DNA topoisomerase 3-beta-1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_122.1_06981.t1 | gi|676466668|ref|XP_009057639.1| | hypothetical protein LOTGIDRAFT_217319 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_122.1_06981.t1 | gi|260805074|ref|XP_002597412.1| | hypothetical protein BRAFLDRAFT_80591 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_122.1_06981.t1 | gi|719770260|ref|XP_010218989.1| | PREDICTED: DNA topoisomerase 3-beta-1 [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_122.1_06981.t1 | gi|527259108|ref|XP_005147810.1| | PREDICTED: DNA topoisomerase 3-beta-1 [Melopsittacus undulatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_122.1_06981.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_122.1_06981.t1 atgaagacggttcttatggttgcagagaagccttccttggcacagtcaatagccaaaattttatctgctgggcaaatgaa cagcagaaaagggacaaatggtgcatgttccattcatgaatacagaggaaaattttctccaactggagagacagtatttt acaagatgacatctgtatgtgggcatgtttatgggctcgactttactggaaaatacaacaattgggatagggtggacccg gttgaattattcacagctccaacacagaaaaaagaagctacagaaaagttgcatatgccaaattttctttcaaaggaggc acgaggggctgactacttggtattgtggttagactgtgacaaggagggagaaaacatttgttttgaagtcatggattgtg taaggtcttcaatgaatagaggtgttggacagactgtgtaccgtgccaagtttagtgcaataacagacaaggatattaaa aatgcaatgaatcatctagtatcacccaataagaatgaagctttgtctgtggacgccagacaggaacttgaccttagaat aggctgtgccttcactcgatatcagactaaatatttccagggtaaatatggagatttagacagcacgttgatatcatacg ggccatgtcagacccccaccctgggattctgtgtagatcgtcatgataagatccagtccttcaaacctgagccattttgg attatacaagtgcagataacagctcctggaggacgtaatgtatttctggactgggacagagtgagatcgtttgacaaaga ggtcgctcacatgtttatgaaccttatcaaggcttctgacaatgccagggttctaaggacagtacaggaagagaaatcta aatcacgtccacaagctcttaacactgtggagatgttgagggcagctagctcagggctaggtatgggtcctcagcacgcc atgcagatagcagagagactgtatacacaaggattcatcagctacccaaggacagaaactacacaatatccagaaaactt tgatctggtggggacactcaggcagcagtcatctaactcagtatggggagactatgtcagagaacttcttaacgctggta ttcagaaaccaaggaagggaacagatgcaggtgaccatccacccattacacctatgagatccgccactgaagcagagctt ggtcatgatgcttggagactgtatgatttcattacaaggcatttcataggaactatatcaccagactgtaagtatactca gacaacagttttctttgagattggggtggagaagtttacatgcactggtaacagaatagtggatccaggatttacagatg ttatgccatggaaaggattaagtaatgatgagacattaccagattttaagagagaagaactgtgtccagtcagtgaggta aaactggttgagagacagacaagccctcctgactacctgacagaaagtgaacttataagtctaatggaaaagaacggcat cggcactgatgccagtatatctgtacatataaacaacatatgtgagagaaactacgttaatgtcataggagggcggagac tgaaaccaactcccctgggtatagtgctggtacatggttatcaaaaaatagatcaggagttagtgctgtcttccatgcga tctgctgtggagaagcagttgaatctcattgccttgggtaaggcatattatgaggatgtcctacaacatgcgctggatat tttttgtcgtaaatttaagtattttgtggaaagcataggagggatggatgaattgtttgaagtgacattttccccattag cagcaacaggcaaacctctttcaagatgtggtaaatgtcgaaggtttatgaagtttgtgatggctaagccatgccgttta cattgctctaattgtgatgagacatactcactgcctcagaatggtaacattaagctatacaaagaactcaagtgtcctct agatgactttgaactggtactatggactacaggtgtaagagggaagagttttcctctttgtccttactgttacaacaatc ctccctttcaagatatgaggaagcagtttgggtgtaaccagtgtacacaccctacctgtcagcatggactgaatcataat ggtgtatcagaatgtgtggagtgtgagggcggggtactggtgttagatacaacatctggacctaaatggaggatggcctg taataaatgtcaagtggtgatcaatttctttgacaatgcgcatagagtgggtgtgtccgaggagatttgtgacgattgtg gagctcatgtagtggatgtggactttagcaagggtaaatcaccattagaggacggcaatacagagcattcaggttgtgta ttctgtgatgctatattcaaaccactagtcgagaagcatcatgccataatacgccgtagaggtggaggacgagcgggtag aggggggaggggcaggggaagggggcgtggtcgaggcaggggaaggtccaaaccaaaggacaaaatggcacagctggcag cttattttgtgtag |
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Protein
| Protein ID | pfu_aug2.0_122.1_06981.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_122.1_06981.t1 MKTVLMVAEKPSLAQSIAKILSAGQMNSRKGTNGACSIHEYRGKFSPTGETVFYKMTSVCGHVYGLDFTGKYNNWDRVDP VELFTAPTQKKEATEKLHMPNFLSKEARGADYLVLWLDCDKEGENICFEVMDCVRSSMNRGVGQTVYRAKFSAITDKDIK NAMNHLVSPNKNEALSVDARQELDLRIGCAFTRYQTKYFQGKYGDLDSTLISYGPCQTPTLGFCVDRHDKIQSFKPEPFW IIQVQITAPGGRNVFLDWDRVRSFDKEVAHMFMNLIKASDNARVLRTVQEEKSKSRPQALNTVEMLRAASSGLGMGPQHA MQIAERLYTQGFISYPRTETTQYPENFDLVGTLRQQSSNSVWGDYVRELLNAGIQKPRKGTDAGDHPPITPMRSATEAEL GHDAWRLYDFITRHFIGTISPDCKYTQTTVFFEIGVEKFTCTGNRIVDPGFTDVMPWKGLSNDETLPDFKREELCPVSEV KLVERQTSPPDYLTESELISLMEKNGIGTDASISVHINNICERNYVNVIGGRRLKPTPLGIVLVHGYQKIDQELVLSSMR SAVEKQLNLIALGKAYYEDVLQHALDIFCRKFKYFVESIGGMDELFEVTFSPLAATGKPLSRCGKCRRFMKFVMAKPCRL HCSNCDETYSLPQNGNIKLYKELKCPLDDFELVLWTTGVRGKSFPLCPYCYNNPPFQDMRKQFGCNQCTHPTCQHGLNHN GVSECVECEGGVLVLDTTSGPKWRMACNKCQVVINFFDNAHRVGVSEEICDDCGAHVVDVDFSKGKSPLEDGNTEHSGCV FCDAIFKPLVEKHHAIIRRRGGGRAGRGGRGRGRGRGRGRGRSKPKDKMAQLAAYFV |
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