Gene
| Gene Model ID | pfu_aug2.0_1220.1_01480 |
|---|---|
| Locus | scaffold1220.1 : 38860 ... 76355 : - |
| To GenomeBrowser | scaffold1220.1:38860..76355 |
| Genes list of scaffold | scaffold1220.1 |
| Synonym | pfu_aug1.0_12025.1_24969 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1220.1_01480.t1 | 2 | 1 | Glyco_hydro_2_N | 184 | 316 | 4.1e-07 | 29.7 | 3.8e-10 | 2.8e-06 | 26.9 |
| pfu_aug2.0_1220.1_01480.t1 | 1 | 1 | Glyco_hydro_2_C | 400 | 621 | 2.4e-06 | 26.6 | 7.1e-10 | 5.3e-06 | 25.5 |
| pfu_aug2.0_1220.1_01480.t1 | 2 | 2 | Glyco_hydro_2_N | 844 | 860 | 4.1e-07 | 29.7 | 0.33 | 2400.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1220.1_01480.t1 | gi|676460962|ref|XP_009055793.1| | hypothetical protein LOTGIDRAFT_119184 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1220.1_01480.t1 | gi|564268022|ref|XP_006272811.1| | PREDICTED: beta-mannosidase [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_1220.1_01480.t1 | gi|560991632|ref|XP_006217958.1| | PREDICTED: beta-mannosidase isoform X1 [Vicugna pacos] | 0.0 |
| pfu_aug2.0_1220.1_01480.t1 | gi|667244891|ref|XP_008579060.1| | PREDICTED: beta-mannosidase [Galeopterus variegatus] | 0.0 |
| pfu_aug2.0_1220.1_01480.t1 | gi|669282636|ref|XP_008633891.1| | PREDICTED: beta-mannosidase, partial [Corvus brachyrhynchos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1220.1_01480.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1220.1_01480.t1 atggagaccaattgtgccccactccttgccgacattttgctttactcgtacgaagctgaattcattcaatctttggtctc acaagggaaaagatacttagcttctgacttcaacttcacttacagatacaaagacgatgtgttgtccatcaataatccaa acttcgcggattacctgagcagtatctatccttcggagcttgaagtcaacgaaactacagagacaaataattcagcatcc tatttggacataatgttgtcctacgacactgatggttacaatatcacagggtctgtcccagggtctatgtatacagtatt aatggagaacaagatgatacaagacccatactaccgtaaaaatgacatcgagtatcgctggatatcacgtgacgactgga catttacacggtactttacaggaaagtatcgctggatctcatgtgacgactggacatttacactgtactttacaagaaag tatcgctggatctcatgtgacgactggacatttaaacggtactttacaggtaagtatcactggatctcacgagacaaatg gacatttacacggcactttacagtaacggcagatcagataaatacatcagcacttgacttggtgtgtaatggactggata ccatagcaaccatactaataaacggacaagtcatcggcaaagctgacaatatgtttagacgttacaagtataacatcaag tctgctctaaaggttggtaacaatacagtcagtgtgaagtttgtatctgccgtgacacacgctgaggtgacagctactaa ctacccctacagcgtgcccccgacatgtgttcctccccagtataaaggtgactgtcatgttaacatgatcaggaaggagc agtgctcatttagctgggactggggaccatcttttcccacccaaggaatctggagggatataacaatagagggctataat acagcttggatcagctatttcactgcagaaactctcaaaggcagtgatggatcatggaacttgaatgtggatgtgttctt ggatgccgcagctgaagttgagggtgaagtagaagtaagactggatataacacagatcggagggaaacaaaatgtaacat taacacctgaccaggagaataaagtcagctttaatgtcactatacctcaggaagaattttgtatgacattttacttcaaa gtgaacgggatgcccatcttcctgaagggatcaaactggattcctgccgacagttttctggagagagttacaaggaatag aactgatcgtttattggagtcagcaaaggatgtgcacatgaacgctatgagggtgtggggtggaggggtttatgagagcg aagatttctatgagctagcagacgagaagggcatcatgttatggcaggactttatgtttggttgtgccatgtacccagct gaccaaggtttcctagataatgttgatgctgaagttttacatcaggtcagacgtcttaaacatcacgcatctataatagt atggagtggtaacaacgaaaacgagaaagcactccggcaaagctggtataacactgacgttaactttacgttatattata acgattacgtcaaactttactcacaaaccgtgtcagtgacagtcaggaacgaggatcctaaccgtccatttatcatgtcc agcccgtctaacgggaaagagagtgactcggaaggatttgtggctaaggaaccttggagtgaactatatggtgatatcca tgactacagatatctggacccgtactatgaagatggtgtctacagaatcccccggctggcgtcagagtacggtctacagt cctacccctcccctgagaccctggggaaagtttacctagatacagacatgacatactggtcagatcttaatgaacacaga caacatcacccaggaggtaacatagagatgctgacagagacctatatgtacctacctgtacccaacaatccagacctcaa agagagatttaaggacatgatatatgtaacacagataaatcaagctgtaggtatgaagacagaaactgaacattacagac gctggcaaaatacgctagacgatacaggacgcggaaatacgatgggggccatgtattggcagttaaatgacatctggcaa gctcctacatgggcttctatagattatggagggaagtggaaaatgctgcattactttgcccagcatttcttctcacccca gctcatcgccccgtacctagataacaaccaggtcaaagtctacatgtgtatagaccaggtccccaccctggagcaccgac acccaactacaaatcatctcaaattccatctgaccaatcatcatggctttctctttagtcccttcatcaccaatgacaac acaggtcatgtgactccaaccagagccaatcagaagacagctcagggaatcttacatgtattgatgtactcgtgggataa atttaacccgctctatgaatggaaatatccttactctgtgaacacgacatcggagtctatatttgagatggacgtcacca gtatgttacagcaatctaactgtatacgtgcccagaactgtttcctttacttccaccttggtgatccgaccaactcacca accgcttacctccccttggatacatataaaaactcacaaggtctacagaaagctcagtgccaggtaacagatgtgatttc agtaagtggtaagaggcaattccagctgactgtaagctgtgttgcaatcgctccatttgtctggttggacgtaactggta tacccggacggttctcagataatggttttctgatgattaatccacaaaccacggttcagttctacgcatgggaagatacg gatgctgacacgttaagtagagtcgtgaccgttaaatcattgatggatgttgttgtagaataa |
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Protein
| Protein ID | pfu_aug2.0_1220.1_01480.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1220.1_01480.t1 METNCAPLLADILLYSYEAEFIQSLVSQGKRYLASDFNFTYRYKDDVLSINNPNFADYLSSIYPSELEVNETTETNNSAS YLDIMLSYDTDGYNITGSVPGSMYTVLMENKMIQDPYYRKNDIEYRWISRDDWTFTRYFTGKYRWISCDDWTFTLYFTRK YRWISCDDWTFKRYFTGKYHWISRDKWTFTRHFTVTADQINTSALDLVCNGLDTIATILINGQVIGKADNMFRRYKYNIK SALKVGNNTVSVKFVSAVTHAEVTATNYPYSVPPTCVPPQYKGDCHVNMIRKEQCSFSWDWGPSFPTQGIWRDITIEGYN TAWISYFTAETLKGSDGSWNLNVDVFLDAAAEVEGEVEVRLDITQIGGKQNVTLTPDQENKVSFNVTIPQEEFCMTFYFK VNGMPIFLKGSNWIPADSFLERVTRNRTDRLLESAKDVHMNAMRVWGGGVYESEDFYELADEKGIMLWQDFMFGCAMYPA DQGFLDNVDAEVLHQVRRLKHHASIIVWSGNNENEKALRQSWYNTDVNFTLYYNDYVKLYSQTVSVTVRNEDPNRPFIMS SPSNGKESDSEGFVAKEPWSELYGDIHDYRYLDPYYEDGVYRIPRLASEYGLQSYPSPETLGKVYLDTDMTYWSDLNEHR QHHPGGNIEMLTETYMYLPVPNNPDLKERFKDMIYVTQINQAVGMKTETEHYRRWQNTLDDTGRGNTMGAMYWQLNDIWQ APTWASIDYGGKWKMLHYFAQHFFSPQLIAPYLDNNQVKVYMCIDQVPTLEHRHPTTNHLKFHLTNHHGFLFSPFITNDN TGHVTPTRANQKTAQGILHVLMYSWDKFNPLYEWKYPYSVNTTSESIFEMDVTSMLQQSNCIRAQNCFLYFHLGDPTNSP TAYLPLDTYKNSQGLQKAQCQVTDVISVSGKRQFQLTVSCVAIAPFVWLDVTGIPGRFSDNGFLMINPQTTVQFYAWEDT DADTLSRVVTVKSLMDVVVE |
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