Gene
| Gene Model ID | pfu_aug2.0_1237.1_24796 |
|---|---|
| Locus | scaffold1237.1 : 55575 ... 69295 : - |
| To GenomeBrowser | scaffold1237.1:55575..69295 |
| Genes list of scaffold | scaffold1237.1 |
| Synonym | pfu_aug1.0_1002.1_51157 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1237.1_24796.t1 | 3 | 1 | Neur_chan_memb | 350 | 376 | 1.1e-06 | 28.7 | 0.54 | 2700.0 | -2.1 |
| pfu_aug2.0_1237.1_24796.t1 | 3 | 2 | Neur_chan_memb | 664 | 716 | 1.1e-06 | 28.7 | 2.2e-10 | 1.1e-06 | 28.7 |
| pfu_aug2.0_1237.1_24796.t1 | 3 | 3 | Neur_chan_memb | 737 | 788 | 1.1e-06 | 28.7 | 0.058 | 290.0 | 1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1237.1_24796.t1 | gi|524912910|ref|XP_005111291.1| | PREDICTED: gamma-aminobutyric acid receptor subunit gamma-3-like [Aplysia californica] | 3.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_1237.1_24796.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1237.1_24796.t1 atgcattcggatatcatatttgttatggtggtttcttttttctgcgtagtgagttgttcatcaaatctcgaatcctgcaa agaaggaaccgttgcttgtgtaggaaagcgtaacatataccaatggtcagtctgtgggagaaagaattgtcgattcagta ggacttgctggtacgcaagctcttactacgtagggcagtatgactttgggcaggttctcaatagctctctgcatacatgt gaaccgatgacaacacaaaaccaattcaaaaagaaaagaataagcctaccatcgacctgctctcattgttttccagatgg aaagacatgcggatggtataacgagatatatgcagtactgccgatatgtgtcagaccgtatgcttcagttgccaaagcgt tttgtaaatcaataagtaatcagacgactatcaggagagacaactatgaccatgaaccatacaggataaatacatgctta cagtccttctttgttccttttttcttgaacaaacattctgcaactatttgctcagatgtgaaactgattgctgcaacagc ttttgatcgttgcatcaaatatccgaaattgggcagtgaggaaaataaagtgctatctatcagtgaactaagcgtttcaa cccgtctttggcttttcaacaagctaaatgatgcttttgctgaaggaaatacaaggaaacgatcacggatttctcaattg aatgaattgatgaactatcttttggaaatagaaacggacaatgcaaatagcttactaaattctttgacagaatctcctga agtgttgcttttcgagttttcttttgacctaaaaaatggagtgaccggcgcacagaatatgtttcaaattattcaaaaaa ttattaaaacgagtccttttgactggttgaacaaattcaatcttttcggcagaaatgccctagaaaagagcagcaatgtg gtaaaagtagtccaaattcttttgatgagaaaagaaaatgaacctgtaggacatataaatttttcggaaattggatgttc tctccaatctgcgttagcaaagatttcaaacagcattgaatcttccattgatggcgtaaagattgcggctcaacggtttc ggagatgtagaagaagatcctgccatgacaaggtcaataccatagtaccaaagaggaggcggagaaaaagaaaagtctca tataaattcgcacagaagcatatcacaagctatctggctattggtggtcgcgaaccaaagtttgctgaagtggagaagat aactacaaaagtcatgagggattatagaggatggaatgacaatacgtataaaatgcgtgattttactcagaccttcattg tatctgaaaatgaacaaaatcttaaagacatgattgatgaaactgtcaaggaagctattgaaagtactggcacatgcgat ataactggcaaatcgaaatgtacgaaacaaaaatcttcaattttcaaacaatattttcattgtgactttgatcctgatga cttttcaaaaatagaaattacattgaaaagagtacagttaaagataattttcctgaaaattggtgaaatcaacaccatag gggaacaattccatgctgatgtgtatatacaggcgagatggagagagccaaaactagacaattgtcaaagtttgaacgtt gtggtgacatcagagctctcacaagagaagttacagatagttgaagatgatgaagacattagtagtattaacgtgtcttg tttcgtggacgagcaagagtggtctctctttgatctggttgagtgcatttcaactgtcacaacaaaacagttctcaccta agcggaacattcggtttccatgcctacaattaggttgctatgcagcgcgacgatccggtttcttcgtatggaatgttata ttaataatggcatttataagtactagttgttttactacatttgccgtcaagccatcactacctcagaaccgcctccagct gtcaatcaccctgatgctaaccacaaaagttttcaaactgattgtcataaacaacctgccaaaaatatcttacaacacgc gattggaccggtatatcttattctgcattgtattcaacttcatagtgacagtatggcatgcatttatatcacgttttgga tacgaccttgaccttcaagagtccatggataactgggctttccttacacttgttctattctacgttctatttttagctat tttcagtctgattgttaccattacatattttatgcggcagtcaactttgaagagtaaactttctaaatatgaggagaaag cgacaaaattactgggttctacatggaaatcacagaggacacagcaaacacatgcgctaagcagaaatcgtggaataagg cgtagaaacgtgcagcctactgatttatctccctatgcgatggtcaatggatacgcagagtaa |
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Protein
| Protein ID | pfu_aug2.0_1237.1_24796.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1237.1_24796.t1 MHSDIIFVMVVSFFCVVSCSSNLESCKEGTVACVGKRNIYQWSVCGRKNCRFSRTCWYASSYYVGQYDFGQVLNSSLHTC EPMTTQNQFKKKRISLPSTCSHCFPDGKTCGWYNEIYAVLPICVRPYASVAKAFCKSISNQTTIRRDNYDHEPYRINTCL QSFFVPFFLNKHSATICSDVKLIAATAFDRCIKYPKLGSEENKVLSISELSVSTRLWLFNKLNDAFAEGNTRKRSRISQL NELMNYLLEIETDNANSLLNSLTESPEVLLFEFSFDLKNGVTGAQNMFQIIQKIIKTSPFDWLNKFNLFGRNALEKSSNV VKVVQILLMRKENEPVGHINFSEIGCSLQSALAKISNSIESSIDGVKIAAQRFRRCRRRSCHDKVNTIVPKRRRRKRKVS YKFAQKHITSYLAIGGREPKFAEVEKITTKVMRDYRGWNDNTYKMRDFTQTFIVSENEQNLKDMIDETVKEAIESTGTCD ITGKSKCTKQKSSIFKQYFHCDFDPDDFSKIEITLKRVQLKIIFLKIGEINTIGEQFHADVYIQARWREPKLDNCQSLNV VVTSELSQEKLQIVEDDEDISSINVSCFVDEQEWSLFDLVECISTVTTKQFSPKRNIRFPCLQLGCYAARRSGFFVWNVI LIMAFISTSCFTTFAVKPSLPQNRLQLSITLMLTTKVFKLIVINNLPKISYNTRLDRYILFCIVFNFIVTVWHAFISRFG YDLDLQESMDNWAFLTLVLFYVLFLAIFSLIVTITYFMRQSTLKSKLSKYEEKATKLLGSTWKSQRTQQTHALSRNRGIR RRNVQPTDLSPYAMVNGYAE |
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