Gene
| Gene Model ID | pfu_aug2.0_124.1_13629 |
|---|---|
| Locus | scaffold124.1 : 19065 ... 25755 : - |
| To GenomeBrowser | scaffold124.1:19065..25755 |
| Genes list of scaffold | scaffold124.1 |
| Synonym | pfu_aug1.0_148549.1_42775 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_124.1_13629.t1 | 4 | 1 | LRR_4 | 26 | 60 | 3.3e-24 | 84.0 | 7.3e-10 | 1.4e-06 | 27.8 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 1 | LRR_8 | 26 | 80 | 5.3e-22 | 77.3 | 1.3e-09 | 2.4e-06 | 27.1 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 1 | LRR_1 | 26 | 44 | 6.8e-16 | 55.8 | 0.0017 | 3.2 | 8.1 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 1 | LRR_7 | 26 | 38 | 1.7e-09 | 36.2 | 0.029 | 53.0 | 4.6 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 2 | LRR_7 | 45 | 58 | 1.7e-09 | 36.2 | 0.0094 | 17.0 | 6.1 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 2 | LRR_1 | 46 | 66 | 6.8e-16 | 55.8 | 4.7e-05 | 0.088 | 12.8 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 2 | LRR_4 | 69 | 106 | 3.3e-24 | 84.0 | 6.5e-11 | 1.2e-07 | 31.1 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 2 | LRR_8 | 69 | 124 | 5.3e-22 | 77.3 | 2.0e-10 | 3.7e-07 | 29.8 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 3 | LRR_1 | 69 | 90 | 6.8e-16 | 55.8 | 0.00032 | 0.59 | 10.3 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 3 | LRR_7 | 69 | 84 | 1.7e-09 | 36.2 | 0.0024 | 4.5 | 7.9 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 4 | LRR_7 | 91 | 107 | 1.7e-09 | 36.2 | 0.0015 | 2.7 | 8.5 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 4 | LRR_1 | 92 | 113 | 6.8e-16 | 55.8 | 0.00054 | 0.99 | 9.6 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 3 | LRR_4 | 116 | 152 | 3.3e-24 | 84.0 | 7.5e-10 | 1.4e-06 | 27.7 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 5 | LRR_1 | 116 | 136 | 6.8e-16 | 55.8 | 0.00053 | 0.99 | 9.6 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 5 | LRR_7 | 116 | 130 | 1.7e-09 | 36.2 | 0.25 | 460.0 | 1.8 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 3 | LRR_8 | 119 | 170 | 5.3e-22 | 77.3 | 1.2e-09 | 2.3e-06 | 27.2 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 6 | LRR_1 | 138 | 154 | 6.8e-16 | 55.8 | 5.2e-05 | 0.097 | 12.7 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 6 | LRR_7 | 138 | 153 | 1.7e-09 | 36.2 | 0.00026 | 0.48 | 10.8 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 4 | LRR_8 | 160 | 200 | 5.3e-22 | 77.3 | 1.1e-06 | 0.002 | 17.8 |
| pfu_aug2.0_124.1_13629.t1 | 4 | 4 | LRR_4 | 170 | 198 | 3.3e-24 | 84.0 | 0.00059 | 1.1 | 8.9 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 7 | LRR_1 | 185 | 198 | 6.8e-16 | 55.8 | 0.014 | 27.0 | 5.3 |
| pfu_aug2.0_124.1_13629.t1 | 7 | 7 | LRR_7 | 185 | 197 | 1.7e-09 | 36.2 | 0.013 | 24.0 | 5.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_124.1_13629.t1 | gi|676456428|ref|XP_009054320.1| | hypothetical protein LOTGIDRAFT_189008 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_124.1_13629.t1 | gi|291241337|ref|XP_002740568.1| | PREDICTED: leucine-rich repeat protein SHOC-2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_124.1_13629.t1 | gi|528485261|ref|XP_005168989.1| | PREDICTED: plant intracellular Ras-group-related LRR protein 5 isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_124.1_13629.t1 | gi|390366219|ref|XP_788132.3| | PREDICTED: leucine-rich repeat protein SHOC-2-like [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_124.1_13629.t1 | gi|390355929|ref|XP_003728659.1| | PREDICTED: leucine-rich repeat-containing protein 1 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_124.1_13629.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_124.1_13629.t1 atggtaccattatgtcagacaactcataatttgtaccactcattggctcaaccaatcctgcaggccgatcctagtgtgct ggtgctaaataacaacagattgactctcctgcccagcggaattggaaacctctccaatctgacgtacctaaatctctgtc ataatcccctcagcgttttatcggaagaaatctgcaagcttgttcaactacaacagctttggcttgttgattgtcaactc agtagtctccctgagaatattggacaactgacaaatctccaaaaattaagtgtgagagaaaactacttagcacatcttcc agaaagttttgtgcatcttcgaaggctgatttggttgtgtctctctgaaaatacatttcaggaattaccggagaacttta gcaaacttgaaaacttagctcatcttgatcttagtcataatcagtttcatgaagttccaaaatgtgtgactgaactgcct gaactggcttgtctacttttgaaagccaactttgtcaaagaagttggtgatgaagcaatattagaattatcaaagcttac gaaacttgatataagggacaatgacattgatgaaaagcctgttcactggaagggtttagaatatattctggttggtaaaa ctggactaaacggtgtaatcagtacagacgatgtaaccagcggaatggaagatttaaagagtcgtgatgcaagtgacgga gaagacggtgatgatgataatgtcggtgaggatgatgatgaagaggaggatgaggaatatgatgacaatgaggatggtga agtggacaataaagagagtagtagttga |
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Protein
| Protein ID | pfu_aug2.0_124.1_13629.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_124.1_13629.t1 MVPLCQTTHNLYHSLAQPILQADPSVLVLNNNRLTLLPSGIGNLSNLTYLNLCHNPLSVLSEEICKLVQLQQLWLVDCQL SSLPENIGQLTNLQKLSVRENYLAHLPESFVHLRRLIWLCLSENTFQELPENFSKLENLAHLDLSHNQFHEVPKCVTELP ELACLLLKANFVKEVGDEAILELSKLTKLDIRDNDIDEKPVHWKGLEYILVGKTGLNGVISTDDVTSGMEDLKSRDASDG EDGDDDNVGEDDDEEEDEEYDDNEDGEVDNKESSS |
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