Gene
| Gene Model ID | pfu_aug2.0_124.1_13636 |
|---|---|
| Locus | scaffold124.1 : 192486 ... 222432 : + |
| To GenomeBrowser | scaffold124.1:192486..222432 |
| Genes list of scaffold | scaffold124.1 |
| Synonym | pfu_aug1.0_240.1_58021 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| macrophage receptor marco isoform x2 | GO:0006897 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_124.1_13636.t1 | 4 | 1 | SRCR | 56 | 86 | 2.4e-24 | 85.5 | 0.26 | 1900.0 | -0.8 |
| pfu_aug2.0_124.1_13636.t1 | 2 | 1 | SRCR_2 | 59 | 84 | 1.2e-06 | 28.6 | 0.13 | 940.0 | 0.1 |
| pfu_aug2.0_124.1_13636.t1 | 4 | 2 | SRCR | 91 | 138 | 2.4e-24 | 85.5 | 0.39 | 2900.0 | -1.4 |
| pfu_aug2.0_124.1_13636.t1 | 4 | 3 | SRCR | 139 | 152 | 2.4e-24 | 85.5 | 0.39 | 2900.0 | -1.4 |
| pfu_aug2.0_124.1_13636.t1 | 4 | 4 | SRCR | 160 | 257 | 2.4e-24 | 85.5 | 3.2e-28 | 2.4e-24 | 85.5 |
| pfu_aug2.0_124.1_13636.t1 | 2 | 2 | SRCR_2 | 162 | 205 | 1.2e-06 | 28.6 | 1.9e-10 | 1.4e-06 | 28.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_124.1_13636.t1 | gi|545190940|ref|XP_005601507.1| | PREDICTED: macrophage receptor MARCO isoform X2 [Equus caballus] | 6.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_124.1_13636.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_124.1_13636.t1 atgaatggagtgttatttacaatatcttttcttggattgcaattgttctatggagtcatttcaaataccgtgataacatc cttttgtccaatcggatacaaacaatgcgtcagggaatgtgacgcttcagcgtcttgttctgacatcatatataccaagg aaaatctgagttgtatcctgcttactgggaatgagacgtcaaatcagaaaatccaaaatgtggaaagtgaacatgaatgt ttaagtaaccagaggaaggtatcacttttgaccgggacaaccatatgtatatattcagactgtccttttggaaacatatc ggcacatcgcacacatatgttggaagtgggatctctagcattaaaaggtcctctatggacttgtaaaacagcatgtgcag tagcctgttctgggaatggtacatgggttccttcttctgattcacactgggaaggtacagtacagctttcaaatgtaccg tcgggtcttctagagatataccataatggaacatgggggacagtgtgtgatgatggttttaacgacgtcgatgcaacagt ggtctgcaaaagtttgggctacaagacgggaacagcttacacattcggacaagcgagcaatttctaccccgctgctccta gtcagattagatggatcatttggttggatgatataacatgttcggggactgaaccgtcgttgacggcatgttctcatatc ggatggggaaatcataactgtgtccagtctgaaaatgttggtgtaaattgcttttga |
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Protein
| Protein ID | pfu_aug2.0_124.1_13636.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_124.1_13636.t1 MNGVLFTISFLGLQLFYGVISNTVITSFCPIGYKQCVRECDASASCSDIIYTKENLSCILLTGNETSNQKIQNVESEHEC LSNQRKVSLLTGTTICIYSDCPFGNISAHRTHMLEVGSLALKGPLWTCKTACAVACSGNGTWVPSSDSHWEGTVQLSNVP SGLLEIYHNGTWGTVCDDGFNDVDATVVCKSLGYKTGTAYTFGQASNFYPAAPSQIRWIIWLDDITCSGTEPSLTACSHI GWGNHNCVQSENVGVNCF |
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