Gene
| Gene Model ID | pfu_aug2.0_124.1_13637 |
|---|---|
| Locus | scaffold124.1 : 232926 ... 249632 : + |
| To GenomeBrowser | scaffold124.1:232926..249632 |
| Genes list of scaffold | scaffold124.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| macrophage receptor marco | GO:0043277 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_124.1_13637.t1 | 3 | 1 | SRCR | 81 | 115 | 4.3e-22 | 78.3 | 0.75 | 1800.0 | -0.8 |
| pfu_aug2.0_124.1_13637.t1 | 3 | 2 | SRCR | 133 | 143 | 4.3e-22 | 78.3 | 1.1 | 2700.0 | -1.3 |
| pfu_aug2.0_124.1_13637.t1 | 3 | 3 | SRCR | 160 | 253 | 4.3e-22 | 78.3 | 1.7e-25 | 4.3e-22 | 78.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_124.1_13637.t1 | gi|594066498|ref|XP_006057219.1| | PREDICTED: macrophage receptor MARCO [Bubalus bubalis] | 6.0e-20 |
| pfu_aug2.0_124.1_13637.t1 | gi|74186710|dbj|BAE34810.1| | unnamed protein product [Mus musculus] | 8.0e-20 |
| pfu_aug2.0_124.1_13637.t1 | gi|466042151|ref|XP_004276557.1| | 1.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_124.1_13637.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_124.1_13637.t1 atgttgactaagtgtttagttgtcgcctttgtgtatttgtcgtgtacttctttcatgaaaggagacatagtaacttacac cattgaatctgtaatgcccattggatggaagcaatgccaaagggaatgtcggcgtaccgtttcttgtgtcaatgttcgct actcaaaagaacatcttcattgtacacttattggaggaaatttgaaggaaaataatgaaattactgtacaggaaacgtcc acaacttgtccgaacaatacaaaagagatatcattgcttaacggaatgaacgcctgcattattgtagactgtccgtactc tagtaatctggctcagtattctaaatttaaagttggtgctttggcttcagctgactacacagcgacttgtcagttatcca ctgaaatggtttgtcaggcaaccggtttctggatacccacaccaaacgagggtgctgtaaaaatacatacgcatgggagt agaggccttctttttgtatactacaactctagatggggtacagtttgtgacgatctatttaacgctactgatgcaaatgt agtgtgtaggatgttgggatacgtcggtggtacaacttacaaatatggggctgtttatcaaaatggtggagaaactgaat atgatatttggctggatgatgtacagtgtactggaagtgtatcttgtctgactgaatgttctcatttggagtggggggat cataactgtattcaggatgaaaacgttggtgtagattgttactga |
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Protein
| Protein ID | pfu_aug2.0_124.1_13637.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_124.1_13637.t1 MLTKCLVVAFVYLSCTSFMKGDIVTYTIESVMPIGWKQCQRECRRTVSCVNVRYSKEHLHCTLIGGNLKENNEITVQETS TTCPNNTKEISLLNGMNACIIVDCPYSSNLAQYSKFKVGALASADYTATCQLSTEMVCQATGFWIPTPNEGAVKIHTHGS RGLLFVYYNSRWGTVCDDLFNATDANVVCRMLGYVGGTTYKYGAVYQNGGETEYDIWLDDVQCTGSVSCLTECSHLEWGD HNCIQDENVGVDCY |
|