Gene
| Gene Model ID | pfu_aug2.0_1240.1_01493 |
|---|---|
| Locus | scaffold1240.1 : 22406 ... 34306 : + |
| To GenomeBrowser | scaffold1240.1:22406..34306 |
| Genes list of scaffold | scaffold1240.1 |
| Synonym | pfu_aug1.0_10359.1_31912 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-binding cassette sub-family d member 2-like | GO:0005524 GO:0008152 GO:0016021 GO:0042626 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1240.1_01493.t1 | 1 | 1 | ABC_membrane_2 | 73 | 359 | 0.0 | 329.8 | 0.0 | 0.0 | 329.4 |
| pfu_aug2.0_1240.1_01493.t1 | 2 | 1 | ABC_tran | 440 | 454 | 6.4e-19 | 68.6 | 5.6 | 8300.0 | -3.1 |
| pfu_aug2.0_1240.1_01493.t1 | 2 | 2 | ABC_tran | 492 | 633 | 6.4e-19 | 68.6 | 1.2e-21 | 1.9e-18 | 67.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1240.1_01493.t1 | gi|524874843|ref|XP_005094155.1| | PREDICTED: ATP-binding cassette sub-family D member 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_1240.1_01493.t1 | gi|676472334|ref|XP_009059459.1| | hypothetical protein LOTGIDRAFT_124414 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1240.1_01493.t1 | gi|291236897|ref|XP_002738377.1| | PREDICTED: ATP-binding cassette sub-family D member 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1240.1_01493.t1 | gi|410928395|ref|XP_003977586.1| | 0.0 | |
| pfu_aug2.0_1240.1_01493.t1 | gi|736297640|ref|XP_010791988.1| | PREDICTED: ATP-binding cassette sub-family D member 2 [Notothenia coriiceps] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1240.1_01493.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1240.1_01493.t1 atggctaagttactttatagttcccgagtgccaaaaataacaaaaaggcacatcgcagtcgggactgcagtttgtttttt gactgcctatggggttaagaaatactgtccaaatatacagaggcttctcggactgaagaagaaaggaaaatccatcgatt ttcttgacgaagatgaggatgatcaaaagtcgctagaaactaaaaagacctcccacaacgtagataagaaattcttcagg gaattgaaagaacttatcaaaataatcattccaagaatatggtcgaaagaatttggtatccttgcccttcatacgtctac cctatttgcaagaacttttctgtcaatctatgtagcaacgttagatggcaaaatagtgaagaccattgtccagagagatg taaaagaatttttactcaagctaggattatggctgttaatcgctgtaccggcaactttcatcaacagtctaatccgtttt ctcgaaagtcagctggcacttgcattgagaacgagacttgtaaagcattcctatgatttgtacttcaagaaccaagttta ctacagagtcagcaatttggacggtcgtctagcgaacgctgaccaatgcttaacagatgatatcacaatgtttacatcgt cacttgctcatttgtactctcacctatcgaagcccattttagatgtagcactgattacatttactttgtaccgctttgca agtagcagaggtgcaagttctaggtatccaataatcatagctactatttcagtctttataactggacaagttttgaaggc agcgtcacccaagtttggaaaactagtcgcagaggaagccaagaggaaaggctatctgagatacattcattccagagtta ttgcaaatgctgaagagatagcattttatggaggacacagagtagagcacagtctactccgcagagcttatgctcaggta gccaagcagatggacctgatatttaggaagcgtctttggtacatcatgctggagcagttcttgatgaagtatggatggag tgccagtggtctactcatggtggccataccgatcattacggcagaacagggcggacggagacctgatggtactttggtag accaggatgcagatggaggtgtcagtgagagaaccagggctttcacaacgtctcgtaacctacttataaactcagctgat gctactgagagaatcatgtcatctttcaaagagatcacagagctggcaggttacacatcacgcgtgtcacagatgctgga ggtcttcaaagacatcaaagaaggaaaatacgagagagcaatggtgtcaaaggtcagggcagaaagtatgcagaaacaaa aacagaaaatgacatcttccctatccattaaaggggaggtgaaggatgtgaatggatacatagctatagagagcttgcca atcattactccaaatggagatgttatagtatctagtctgacattgaagatagagcctgagatgcacttactgatcacagg acccaatggctgtggtaaatcttctttattccgtatcctgagcggattatggccagcttacaatggaaaactacacaaac cctcacctagtcagatgttctatatacctcagaggccgtacatgtccataggtaccctacgtgaccaggttatctaccct gacagcatagaggacatgcacaaaaaagggctgaaagaccaggacctgtacaaaatcctggccactgtcaatctacaaca aattatagaaagggaaggaggttttgatgcgactagtgattggaaggacatgctgtctggtggagaaaaacagagaatgg gcatggccaggatattctatcacagaccccagtttgccttgctagatgagtgtacgagtgccgtttctatagacgtagaa agtaaaatctaccaagcagtgaagaatgctggtatatgtctcctgacgatcacacacagaccctcactgtggaaatttca cacccatctactgcaatttgatggagaggggggatggagaatggaggcactagataccactgctagactgtcactgaacg aggaaaaacaacgactagaaagtcagctagcaggcttgccagaaatgcatcgacgtttgaaggaattatgttcaatactc ggtgaagattcagtattgatggacaaggaccaggctcttgaagagtgtgcataa |
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Protein
| Protein ID | pfu_aug2.0_1240.1_01493.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1240.1_01493.t1 MAKLLYSSRVPKITKRHIAVGTAVCFLTAYGVKKYCPNIQRLLGLKKKGKSIDFLDEDEDDQKSLETKKTSHNVDKKFFR ELKELIKIIIPRIWSKEFGILALHTSTLFARTFLSIYVATLDGKIVKTIVQRDVKEFLLKLGLWLLIAVPATFINSLIRF LESQLALALRTRLVKHSYDLYFKNQVYYRVSNLDGRLANADQCLTDDITMFTSSLAHLYSHLSKPILDVALITFTLYRFA SSRGASSRYPIIIATISVFITGQVLKAASPKFGKLVAEEAKRKGYLRYIHSRVIANAEEIAFYGGHRVEHSLLRRAYAQV AKQMDLIFRKRLWYIMLEQFLMKYGWSASGLLMVAIPIITAEQGGRRPDGTLVDQDADGGVSERTRAFTTSRNLLINSAD ATERIMSSFKEITELAGYTSRVSQMLEVFKDIKEGKYERAMVSKVRAESMQKQKQKMTSSLSIKGEVKDVNGYIAIESLP IITPNGDVIVSSLTLKIEPEMHLLITGPNGCGKSSLFRILSGLWPAYNGKLHKPSPSQMFYIPQRPYMSIGTLRDQVIYP DSIEDMHKKGLKDQDLYKILATVNLQQIIEREGGFDATSDWKDMLSGGEKQRMGMARIFYHRPQFALLDECTSAVSIDVE SKIYQAVKNAGICLLTITHRPSLWKFHTHLLQFDGEGGWRMEALDTTARLSLNEEKQRLESQLAGLPEMHRRLKELCSIL GEDSVLMDKDQALEECA |
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