Gene
| Gene Model ID | pfu_aug2.0_125.1_16965 |
|---|---|
| Locus | scaffold125.1 : 72489 ... 103855 : - |
| To GenomeBrowser | scaffold125.1:72489..103855 |
| Genes list of scaffold | scaffold125.1 |
| Synonym | pfu_aug1.0_17794.1_47128 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_125.1_16965.t1 | 1 | 1 | Prominin | 66 | 844 | 0.0 | 548.8 | 0.0 | 0.0 | 547.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_125.1_16965.t1 | gi|676454698|ref|XP_009053766.1| | hypothetical protein LOTGIDRAFT_175163 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_125.1_16965.t1 | gi|632943887|ref|XP_007887201.1| | PREDICTED: prominin-1 isoform X5 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_125.1_16965.t1 | gi|632943889|ref|XP_007887202.1| | PREDICTED: prominin-1 isoform X6 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_125.1_16965.t1 | gi|632943885|ref|XP_007887200.1| | PREDICTED: prominin-1 isoform X4 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_125.1_16965.t1 | gi|632943883|ref|XP_007887199.1| | PREDICTED: prominin-1 isoform X3 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_125.1_16965.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_125.1_16965.t1 atgactatgatttcaaaggatatattaacattaagttgtcttatatgtataagtgcttgtgtattaagtgttgtgaaagc agctgaccctgtcttgtctccggagactattagtgactctaatggaaactcagctgatagaaacagtgatatcacatggt cagatattcctacattcgcaacataccttgccggttctgtggtttataatgacaatggactaggtcctatgtatgacttt gctaagtctttcatcaatggtggtgttttcccatatgatcttccttgggatacaattgacaaagcattgaatggaacact gatcagtgatgttacaacaaattacatgatttatctgagacagtttggaggatatggagcctgtatcatcattggtttcc tcttcatcttcctctttcctatcatcggtttctgcttctgttgttgtcgatgttgtggtaactgtggaggaaaaatggaa cagaacaaatctgatgccggagctcacatcaagagacgaatcttcgcatgcatcttgtttgtactcattgcatttacact tgcagggaatgtgtcagtgtttgtaacaaatgaccagatcagctatgccttggacaatattgatgatgcggtcacaagga acttagatgatttgtcatcatatgtcaacaatactattgatcaaatcagatatgtggcaaatgataatttcaactttaca ttggatgttgtcttcagagatttggacaatattgcctacattttgggaattcccctcagacaaagtcttagtaactcagg cggaatcaacaatgccatcaatagtggatatgctttagaaaaccgtgtcagtagtatatccaatacccttctagccgtca acacaacacttgatgatgtcaaaaccaaaggaaacatactgaaaagtaacctgtctgatctgaaggcagacatagatacc acatgtgtgtccccctgtagtattaatactgcaggagttgttattggattcgacaataatgatttccctgacatatccga tccagttagtaagatatcagacgtacaggcacagaatctgactgctgttgttgtagatgcccagaaggaatttgatgaca taccatggagggtacataatgaatcgttgactgcagtgacaggtaggtcacttcttgattataaagcaagactaacattc ttgccacaggccgtaaaagcgactgatctgaaagatatgatatccaacttctccggtaaactagacgatttggttgacca gatggttactgcccaggactccttgagtggtagcacactgaatgatttcaaaacacaagtgagggattatgttgacatag ctgaacagtatgataaatacagacattatggtggtgtagcattaggatgtaccgtcctactagttgtggttctacagttc tttggtttggcattcggtgtacttggacatagagatgtatcacctgtgaatagaggatgtatggggaccactggtggaaa tatgctcatggcgtctgttggatttgtatttattttctcatggctgttgatgttgcttaccactttgacgtttataattg gagctccactagagaagtttctgtgtaaaacactgacatctccggatatgtctgatctggacgagcttgttgacgaaagg atatttaagataatgtatccggacagagactctggtacactgctgggagtggctatctttggtaatgacacagtggacct gaaatttacacaaatgttacaggattgccaagctggtaaagcagcatacgtagccttcaaactagataatctgtttgaca tcagtaattttatcaactatacaaataccatgaacatcagtggagaaatagataaaatacagaacaacatagacctatct gacattgaagtcctgacccctgacctgacctcacagcttaataatctgaaggattcagtcaatgtcaactttacacaatt cagggatcagctgaataagaatgcgacagatcaggatcttgtagacttggcaaaccagttagatacagcagcaagcgctg cctctggtataacgaagacaaatctggaagctctcagagatcggacattggccatcaacaacacagagtatgctaatgtg atgacagctatgactcagcttggaacagatcttgatgccttagaaacagcagttaatggaacaacagagtacctccgtaa taatgcctcctcaaccatagctgatgaggttagaacctactcagacaggattttcagtatcattgactcctatattgctg acgtcctctatgctctaaataatgaacttggaacctgtgagccaatatggacgctgtacaacagtctggtcgttattaca ttctgtaattacaccatagatacattgaatggtttctggttcggacttggctggtgtatcttcttctttgtacctagtat tatatttgccgtaaagctagcgaagcactacagaaggatgaaacagtcagattataaccagaacgcctcattctcatcac tcatagcatacaaatcagacttcagttcccttatatttgaggacagggtatga |
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Protein
| Protein ID | pfu_aug2.0_125.1_16965.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_125.1_16965.t1 MTMISKDILTLSCLICISACVLSVVKAADPVLSPETISDSNGNSADRNSDITWSDIPTFATYLAGSVVYNDNGLGPMYDF AKSFINGGVFPYDLPWDTIDKALNGTLISDVTTNYMIYLRQFGGYGACIIIGFLFIFLFPIIGFCFCCCRCCGNCGGKME QNKSDAGAHIKRRIFACILFVLIAFTLAGNVSVFVTNDQISYALDNIDDAVTRNLDDLSSYVNNTIDQIRYVANDNFNFT LDVVFRDLDNIAYILGIPLRQSLSNSGGINNAINSGYALENRVSSISNTLLAVNTTLDDVKTKGNILKSNLSDLKADIDT TCVSPCSINTAGVVIGFDNNDFPDISDPVSKISDVQAQNLTAVVVDAQKEFDDIPWRVHNESLTAVTGRSLLDYKARLTF LPQAVKATDLKDMISNFSGKLDDLVDQMVTAQDSLSGSTLNDFKTQVRDYVDIAEQYDKYRHYGGVALGCTVLLVVVLQF FGLAFGVLGHRDVSPVNRGCMGTTGGNMLMASVGFVFIFSWLLMLLTTLTFIIGAPLEKFLCKTLTSPDMSDLDELVDER IFKIMYPDRDSGTLLGVAIFGNDTVDLKFTQMLQDCQAGKAAYVAFKLDNLFDISNFINYTNTMNISGEIDKIQNNIDLS DIEVLTPDLTSQLNNLKDSVNVNFTQFRDQLNKNATDQDLVDLANQLDTAASAASGITKTNLEALRDRTLAINNTEYANV MTAMTQLGTDLDALETAVNGTTEYLRNNASSTIADEVRTYSDRIFSIIDSYIADVLYALNNELGTCEPIWTLYNSLVVIT FCNYTIDTLNGFWFGLGWCIFFFVPSIIFAVKLAKHYRRMKQSDYNQNASFSSLIAYKSDFSSLIFEDRV |
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